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Rapgef4os1 Gene Detail
Summary
  • Symbol
    Rapgef4os1
  • Name
    Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1
  • Synonyms
    Gm13634
Location &
Maps
more
  • Sequence Map
    Chr2:71927388-71988193 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 42.95 cM
Strain
Comparison
more
  • SNPs within 2kb
    1753 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649714
 antisense lncRNA gene Chr2:71927388-71988193 (-)
129S1/SvImJ ENSMUSG00200037063
 lncRNA gene Chr2:69001131-69052300 (-)
A/J ENSMUSG00195023408
 lncRNA gene Chr2:69149542-69198598 (-)
AKR/J ENSMUSG00220040735
 lncRNA gene Chr2:69114200-69163265 (-)
BALB/cJ ENSMUSG00180043238
 lncRNA gene Chr2:69103317-69152375 (-)
C3H/HeJ ENSMUSG00175037543
 lncRNA gene Chr2:69216470-69267665 (-)
C57BL/6NJ ENSMUSG00215032759
 lncRNA gene Chr2:69038386-69089585 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005009278
 lncRNA gene Chr2:68525525-68574867 (-)
CBA/J ENSMUSG00210038493
 lncRNA gene Chr2:69259253-69310452 (-)
DBA/2J ENSMUSG00185041737
 lncRNA gene Chr2:69094982-69146182 (-)
FVB/NJ ENSMUSG00205039213
 lncRNA gene Chr2:68559625-68608675 (-)
JF1/MsJ ENSUMUG00000007060
 lncRNA gene Chr2:68759179-68808247 (-)
LP/J ENSMUSG00230022942
 lncRNA gene Chr2:70902832-70951882 (-)
NOD/ShiLtJ ENSMUSG00190040597
 lncRNA gene Chr2:69182426-69231470 (-)
NZO/HlLtJ ENSMUSG00225015288
 lncRNA gene Chr2:78644414-78695608 (-)
PWK/PhJ ENSLUMG00010035005
 lncRNA gene Chr2:68991099-69040296 (-)
SPRET/EiJ ENSMSPG00010036905
 lncRNA gene Chr2:70394149-70442577 (-)
WSB/EiJ ENSIUOG00005019966
 lncRNA gene Chr2:69222523-69273597 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    21
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085439 Ensembl Gene Model | MGI Sequence Detail 60806 C57BL/6J ±  kb
transcript ENSMUST00000334976 Ensembl | MGI Sequence Detail 940 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 20
    Phenotypes 15
  • Earliest
    J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
  • Latest
    J:373797 Hintermann A, et al., Co-option of an ancestral cloacal regulatory landscape during digit evolution. Nature. 2025 Sep 17;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/06/2026
MGI 6.29 		The Jackson Laboratory