Gm14488 Gene Detail

Summary

• Symbol
  Gm14488
• Name
  predicted gene 14488

• Feature Type
  lncRNA gene
• IDs
  MGI:3649725
  NCBI Gene: 100038700
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:30603159-30610069 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 21.72 cM

Strain
Comparison

• SNPs within 2kb
  222 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649725	lncRNA gene	Chr2:30603159-30613795 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015410	unclassified non-coding RNA gene	Chr2:28981619-28989087 (-)
A/J	MGP_AJ_G0015385	unclassified non-coding RNA gene	Chr2:27808378-27815213 (-)
AKR/J	MGP_AKRJ_G0015349	unclassified non-coding RNA gene	Chr2:28756646-28763523 (-)
BALB/cJ	MGP_BALBcJ_G0015349	unclassified non-coding RNA gene	Chr2:27944919-27951727 (-)
C3H/HeJ	MGP_C3HHeJ_G0015173	unclassified non-coding RNA gene	Chr2:28682584-28690457 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015803	unclassified non-coding RNA gene	Chr2:29924674-29931569 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013544	unclassified non-coding RNA gene	Chr2:26577020-26583979 (-)
CAST/EiJ	MGP_CASTEiJ_G0014724	unclassified non-coding RNA gene	Chr2:28604881-28611746 (-)
CBA/J	MGP_CBAJ_G0015152	unclassified non-coding RNA gene	Chr2:30968985-30981176 (-)
DBA/2J	MGP_DBA2J_G0015247	unclassified non-coding RNA gene	Chr2:27592698-27600436 (-)
FVB/NJ	MGP_FVBNJ_G0015254	unclassified non-coding RNA gene	Chr2:27421327-27428045 (-)
LP/J	MGP_LPJ_G0015327	unclassified non-coding RNA gene	Chr2:28894867-28904714 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015280	unclassified non-coding RNA gene	Chr2:30778543-30785362 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015842	unclassified non-coding RNA gene	Chr2:28672015-28680424 (-)
PWK/PhJ	MGP_PWKPhJ_G0014513	unclassified non-coding RNA gene	Chr2:27450746-27458289 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014301	unclassified non-coding RNA gene	Chr2:28798699-28805653 (-)
WSB/EiJ	MGP_WSBEiJ_G0014831	unclassified non-coding RNA gene	Chr2:28829559-28836447 (-)

Homology

• Gene Tree
  Gm14488
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  24
• Gene trapped
  24
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000075416 (Evidence)
• NCBI Gene
  100038700

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075416	Ensembl Gene Model | MGI Sequence Detail	6911	C57BL/6J
transcript	ENSMUST00000131207	Ensembl | MGI Sequence Detail	2941	Not Applicable
polypeptide	Q3UU03	UniProt | EBI | MGI Sequence Detail	139	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm14488:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23388	Chr2:30610034-30610045 (-)	29 bp