Gm11269 Gene Detail

Summary

• Symbol
  Gm11269
• Name
  predicted gene 11269

• Feature Type
  lncRNA gene
• IDs
  MGI:3649855
  NCBI Gene: 102635985
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:82611042-82611948 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 39.40 cM

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649855	lncRNA gene	Chr4:82610030-82612424 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003912	antisense lncRNA gene	Chr4:82262591-82263497 (+)
A/J	MGP_AJ_G0003892	antisense lncRNA gene	Chr4:79426685-79427591 (+)
AKR/J	MGP_AKRJ_G0003869	antisense lncRNA gene	Chr4:81470371-81471277 (+)
BALB/cJ	MGP_BALBcJ_G0003878	antisense lncRNA gene	Chr4:79663654-79664560 (+)
C3H/HeJ	MGP_C3HHeJ_G0003825	antisense lncRNA gene	Chr4:82069453-82070359 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004026	antisense lncRNA gene	Chr4:85524232-85525138 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003517	antisense lncRNA gene	Chr4:75393839-75394718 (+)
CAST/EiJ	MGP_CASTEiJ_G0003789	antisense lncRNA gene	Chr4:79973578-79974457 (+)
CBA/J	MGP_CBAJ_G0003818	antisense lncRNA gene	Chr4:88165240-88166146 (+)
DBA/2J	MGP_DBA2J_G0003835	antisense lncRNA gene	Chr4:79204244-79205150 (+)
FVB/NJ	MGP_FVBNJ_G0003853	antisense lncRNA gene	Chr4:78184071-78184977 (+)
LP/J	MGP_LPJ_G0003914	antisense lncRNA gene	Chr4:82621194-82622100 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003841	antisense lncRNA gene	Chr4:93265341-93266247 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004021	antisense lncRNA gene	Chr4:81514462-81515368 (+)
PWK/PhJ	MGP_PWKPhJ_G0003744	antisense lncRNA gene	Chr4:77543559-77544440 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003690	antisense lncRNA gene	Chr4:79065313-79067916 (+)
WSB/EiJ	MGP_WSBEiJ_G0003824	antisense lncRNA gene	Chr4:81716465-81717371 (+)

Homology

• Gene Tree
  Gm11269
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm11269
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086293 (Evidence)
• NCBI Gene
  102635985

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086293	Ensembl Gene Model | MGI Sequence Detail	907	C57BL/6J
transcript	ENSMUST00000157011	Ensembl | MGI Sequence Detail	595	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm11269:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37686	Chr4:82610988-82611004 (+)	-46 bp
Tssr37687	Chr4:82611005-82611013 (+)	-33 bp