Gm12897 Pseudogene Detail

Summary

• Symbol
  Gm12897
• Name
  predicted gene 12897

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3649906
  NCBI Gene: 115489968
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:122021017-122039925 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.06 cM

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649906	pseudogene	Chr4:122020987-122039990 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040354	pseudogene	Chr4:118704174-119111175 (+)
AKR/J	MGP_AKRJ_G0040283	pseudogene	Chr4:121784907-122317162 (+)
BALB/cJ	MGP_BALBcJ_G0040357	pseudogene	Chr4:118873878-118893505 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040959	pseudogene	Chr4:128709457-128726367 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039055	pseudogene	Chr4:120223021-120458636 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040107	pseudogene	Chr4:117817760-117838357 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0040099	pseudogene	Chr4:136043414-136066016 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041050	pseudogene	Chr4:122318951-122353763 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038447	pseudogene	Chr4:118548857-118607403 (+)
WSB/EiJ	MGP_WSBEiJ_G0039296	pseudogene	Chr4:121957166-122790309 (+)

Homology

• Gene Tree
  Gm12897
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12897
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000083949 (Evidence)
• NCBI Gene
  115489968

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083949	Ensembl Gene Model | MGI Sequence Detail	18909	C57BL/6J
transcript	ENSMUST00000120341	Ensembl | MGI Sequence Detail	250	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;