Gm13375 Gene Detail

Summary

• Symbol
  Gm13375
• Name
  predicted gene 13375

• Feature Type
  lncRNA gene
• IDs
  MGI:3649913
  NCBI Gene: 433408
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr2:20973833-20975168 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 14.68 cM

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649913	lncRNA gene	Chr2:20973685-20975168 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003517	antisense lncRNA gene	Chr2:18758160-18759103 (+)
A/J	MGP_AJ_G0003497	antisense lncRNA gene	Chr2:18009988-18010931 (+)
AKR/J	MGP_AKRJ_G0003476	antisense lncRNA gene	Chr2:18652602-18653545 (+)
BALB/cJ	MGP_BALBcJ_G0003486	antisense lncRNA gene	Chr2:18061503-18062449 (+)
C3H/HeJ	MGP_C3HHeJ_G0003434	antisense lncRNA gene	Chr2:18525869-18526812 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003624	antisense lncRNA gene	Chr2:19300789-19301732 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003134	antisense lncRNA gene	Chr2:17311508-17312482 (+)
CAST/EiJ	MGP_CASTEiJ_G0003397	antisense lncRNA gene	Chr2:18491938-18494045 (+)
CBA/J	MGP_CBAJ_G0003431	antisense lncRNA gene	Chr2:20076521-20077464 (+)
DBA/2J	MGP_DBA2J_G0003439	antisense lncRNA gene	Chr2:17930171-17931114 (+)
FVB/NJ	MGP_FVBNJ_G0003458	antisense lncRNA gene	Chr2:17722151-17723094 (+)
LP/J	MGP_LPJ_G0003512	antisense lncRNA gene	Chr2:18597247-18598190 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003446	antisense lncRNA gene	Chr2:20028597-20029540 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003627	antisense lncRNA gene	Chr2:18547282-18548225 (+)
PWK/PhJ	MGP_PWKPhJ_G0003353	antisense lncRNA gene	Chr2:17783693-17784651 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003298	antisense lncRNA gene	Chr2:18746813-18747766 (+)
WSB/EiJ	MGP_WSBEiJ_G0003432	antisense lncRNA gene	Chr2:18623707-18624650 (+)

Homology

• Gene Tree
  Gm13375
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000075514 (Evidence)
• NCBI Gene
  433408

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075514	Ensembl Gene Model | MGI Sequence Detail	1336	C57BL/6J
transcript	ENSMUST00000241102	Ensembl | MGI Sequence Detail	1280	Not Applicable
polypeptide	Q3TYJ6	UniProt | EBI | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm13375:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16460	Chr2:20972159-20972176 (+)	-1,665 bp
Tssr16461	Chr2:20973476-20973508 (+)	-341 bp
Tssr16462	Chr2:20973513-20973526 (+)	-313 bp
Tssr16463	Chr2:20973542-20973555 (+)	-284 bp
Tssr16464	Chr2:20973879-20973908 (+)	61 bp
Tssr16465	Chr2:20975065-20975068 (+)	1,234 bp