Gm13421 Gene Detail

Summary

• Symbol
  Gm13421
• Name
  predicted gene 13421

• Feature Type
  lncRNA gene
• IDs
  MGI:3649922
  NCBI Gene: 105244102
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:27430438-27436102 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 19.38 cM

Strain
Comparison

• SNPs within 2kb
  318 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649922	lncRNA gene	Chr2:27430429-27436104 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015404	unclassified non-coding RNA gene	Chr2:25533571-25536507 (+)
A/J	MGP_AJ_G0015379	unclassified non-coding RNA gene	Chr2:24582649-24585585 (+)
AKR/J	MGP_AKRJ_G0015343	unclassified non-coding RNA gene	Chr2:25390984-25393920 (+)
BALB/cJ	MGP_BALBcJ_G0015343	unclassified non-coding RNA gene	Chr2:24695177-24698113 (+)
C3H/HeJ	MGP_C3HHeJ_G0015167	unclassified non-coding RNA gene	Chr2:25309122-25312058 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015797	unclassified non-coding RNA gene	Chr2:26405652-26408588 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013538	unclassified non-coding RNA gene	Chr2:23394611-23397945 (+)
CAST/EiJ	MGP_CASTEiJ_G0014718	unclassified non-coding RNA gene	Chr2:25194320-25197285 (+)
CBA/J	MGP_CBAJ_G0015146	unclassified non-coding RNA gene	Chr2:27306950-27309886 (+)
DBA/2J	MGP_DBA2J_G0015241	unclassified non-coding RNA gene	Chr2:24392473-24395409 (+)
FVB/NJ	MGP_FVBNJ_G0015248	unclassified non-coding RNA gene	Chr2:24155759-24158695 (+)
LP/J	MGP_LPJ_G0015321	unclassified non-coding RNA gene	Chr2:25478720-25481656 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015274	unclassified non-coding RNA gene	Chr2:27336312-27339255 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015836	unclassified non-coding RNA gene	Chr2:25308504-25311440 (+)
PWK/PhJ	MGP_PWKPhJ_G0014507	unclassified non-coding RNA gene	Chr2:24184016-24186942 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014295	unclassified non-coding RNA gene	Chr2:25464263-25467171 (+)
WSB/EiJ	MGP_WSBEiJ_G0014825	unclassified non-coding RNA gene	Chr2:25431200-25434142 (+)

Homology

• Gene Tree
  Gm13421
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  15
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000085929 (Evidence)
• NCBI Gene
  105244102

Representative Sequences			Length	Strain/Species
genomic	105244102	NCBI Gene Model | MGI Sequence Detail	5665	C57BL/6J
transcript	NR_166126	RefSeq | MGI Sequence Detail	3531	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm13421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16857	Chr2:27430431-27430475 (+)	15 bp
Tssr16858	Chr2:27434860-27434887 (+)	4,436 bp