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Chchd2-ps Pseudogene Detail
Summary
  • Symbol
    Chchd2-ps
  • Name
    coiled-coil-helix-coiled-coil-helix domain containing 2, pseudogene
  • Synonyms
    Gm13202
  • Feature Type
    pseudogene
  • IDs
    MGI:3649942
    NCBI Gene: 433806
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:148152488-148152949 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 78.67 cM
Strain
Comparison
more
  • SNPs within 2kb
    90 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649942
 pseudogene Chr4:148152277-148152991 (-)
129S1/SvImJ MGP_129S1SvImJ_G0014692
 pseudogene ChrX:100446366-100446851 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0014625
 pseudogene ChrX:103412938-103413423 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0014477
 pseudogene ChrX:100901105-100901627 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015133
 pseudogene ChrX:103395835-103396320 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0014469
 pseudogene ChrX:106614471-106614956 (-)
DBA/2J MGP_DBA2J_G0014553
 pseudogene ChrX:99601561-99602046 (-)
FVB/NJ MGP_FVBNJ_G0014534
 pseudogene ChrX:98913145-98913630 (-)
LP/J MGP_LPJ_G0014650
 pseudogene ChrX:101447692-101448177 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0014579
 pseudogene ChrX:111260510-111260995 (-)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CHCHD2, coiled-coil-helix-coiled-coil-helix domain containing 2
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CHCHD2, coiled-coil-helix-coiled-coil-helix domain containing 2
  • Synonyms
    C7orf17, MIX17B, MNRR1, NS2TP, PARK22
  • Links
    NCBI Gene ID: 51142
    neXtProt AC: NX_Q9Y6H1
    UniProt: Q9Y6H1

  • Chr Location
    7p11.2; chr7:56101573-56106476 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CHCHD2 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    14
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000094320 Ensembl Gene Model | MGI Sequence Detail 462 C57BL/6J ±  kb
transcript ENSMUST00000117487 Ensembl | MGI Sequence Detail 462 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:5896361
References
more
  • Summaries
    All 8
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:164563 The Gene Ontology Consortium, Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs. 2010 Oct;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory