Gm12648 Gene Detail

Summary

• Symbol
  Gm12648
• Name
  predicted gene 12648

• Feature Type
  lncRNA gene
• IDs
  MGI:3649948
  NCBI Gene: 108168967
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:93977813-94313825 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 43.27 cM

Strain
Comparison

• SNPs within 2kb
  7512 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649948	lncRNA gene	Chr4:93976375-94313825 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006466	lincRNA gene	Chr4:94144860-94476209 (-)
A/J	MGP_AJ_G0006458	lincRNA gene	Chr4:90840673-91167897 (-)
AKR/J	MGP_AKRJ_G0006432	lincRNA gene	Chr4:92992959-93327842 (-)
BALB/cJ	MGP_BALBcJ_G0006432	lincRNA gene	Chr4:91084947-91417899 (-)
C3H/HeJ	MGP_C3HHeJ_G0006382	lincRNA gene	Chr4:93833937-94171542 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006598	lincRNA gene	Chr4:97743259-98083617 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0006315	lincRNA gene	Chr4:91708839-92038887 (-)
CBA/J	MGP_CBAJ_G0006365	lincRNA gene	Chr4:100721555-101073607 (-)
DBA/2J	MGP_DBA2J_G0006387	lincRNA gene	Chr4:90614771-90943050 (-)
FVB/NJ	MGP_FVBNJ_G0006409	lincRNA gene	Chr4:89482473-89808487 (-)
LP/J	MGP_LPJ_G0006468	lincRNA gene	Chr4:94467444-94799090 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006396	lincRNA gene	Chr4:106475522-106832152 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006602	lincRNA gene	Chr4:93282022-93621109 (-)
PWK/PhJ	MGP_PWKPhJ_G0006252	lincRNA gene	Chr4:88774058-89105610 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0006361	lincRNA gene	Chr4:93441170-93776322 (-)

Homology

• Gene Tree
  Gm12648
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12648
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000085931 (Evidence)
• NCBI Gene
  108168967

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085931	Ensembl Gene Model | MGI Sequence Detail	336013	C57BL/6J
transcript	ENSMUST00000126270	Ensembl | MGI Sequence Detail	656	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12648:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1231	Chr4:94219891-94219892 (-)	93,933 bp
Tssr42438	Chr4:94219850-94219863 (-)	93,968 bp
Tssr42437	Chr4:94219829-94219839 (-)	93,991 bp
Tssr42436	Chr4:94217665-94217669 (-)	96,158 bp
Tssr42435	Chr4:94216089-94216094 (-)	97,733 bp