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Platr29 Gene Detail
Summary
  • Symbol
    Platr29
  • Name
    pluripotency associated transcript 29
  • Synonyms
    Gm11463
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3650001
    NCBI Gene: 108168815
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:165818677-165827844 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 86.20 cM
Strain
Comparison
more
  • SNPs within 2kb
    324 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650001
 lncRNA gene Chr2:165815238-165827844 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006067
 lincRNA gene Chr2:171592197-171605181 (-)
A/J MGP_AJ_G0006058
 lincRNA gene Chr2:164545042-164553952 (-)
AKR/J MGP_AKRJ_G0006034
 lincRNA gene Chr2:169455413-169466240 (-)
BALB/cJ MGP_BALBcJ_G0006035
 lincRNA gene Chr2:164906995-164915983 (-)
C3H/HeJ MGP_C3HHeJ_G0005984
 lincRNA gene Chr2:169807549-169816480 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006196
 lincRNA gene Chr2:176575247-176586285 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005522
 lincRNA gene Chr2:157920414-157931550 (-)
CAST/EiJ MGP_CASTEiJ_G0005921
 lincRNA gene Chr2:170240752-170250560 (-)
CBA/J MGP_CBAJ_G0005970
 lincRNA gene Chr2:183018733-183033385 (-)
DBA/2J MGP_DBA2J_G0005989
 lincRNA gene Chr2:163692234-163701669 (-)
FVB/NJ MGP_FVBNJ_G0006014
 lincRNA gene Chr2:162160604-162172051 (-)
LP/J MGP_LPJ_G0006071
 lincRNA gene Chr2:171617882-171627732 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006003
 lincRNA gene Chr2:186487726-186497756 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006198
 lincRNA gene Chr2:169352347-169362025 (-)
PWK/PhJ MGP_PWKPhJ_G0005867
 lincRNA gene Chr2:163313472-163322578 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005777
 lincRNA gene Chr2:168279145-168290986 (-)
WSB/EiJ MGP_WSBEiJ_G0005970
 lincRNA gene Chr2:170248082-170259346 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000084816 Ensembl Gene Model | MGI Sequence Detail 9168 C57BL/6J ±  kb
transcript ENSMUST00000130022 Ensembl | MGI Sequence Detail 830 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 9
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory