Gm13657 Gene Detail

Summary

• Symbol
  Gm13657
• Name
  predicted gene 13657

• Feature Type
  lncRNA gene
• IDs
  MGI:3650031
  NCBI Gene: 102638051
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:75607495-75612650 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.77 cM

Strain
Comparison

• SNPs within 2kb
  252 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650031	lncRNA gene	Chr2:75607210-75621631 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015431	unclassified non-coding RNA gene	Chr2:76152569-76157655 (+)
A/J	MGP_AJ_G0015406	unclassified non-coding RNA gene	Chr2:73170821-73175912 (+)
AKR/J	MGP_AKRJ_G0015370	unclassified non-coding RNA gene	Chr2:75144710-75149795 (+)
BALB/cJ	MGP_BALBcJ_G0015370	unclassified non-coding RNA gene	Chr2:73358582-73363681 (+)
C3H/HeJ	MGP_C3HHeJ_G0015194	unclassified non-coding RNA gene	Chr2:75348288-75354260 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015824	unclassified non-coding RNA gene	Chr2:78417775-78422887 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013564	unclassified non-coding RNA gene	Chr2:70584548-70589868 (+)
CAST/EiJ	MGP_CASTEiJ_G0014745	unclassified non-coding RNA gene	Chr2:75667113-75673852 (+)
CBA/J	MGP_CBAJ_G0015173	unclassified non-coding RNA gene	Chr2:81289910-81294995 (+)
DBA/2J	MGP_DBA2J_G0015268	unclassified non-coding RNA gene	Chr2:72764635-72770040 (+)
FVB/NJ	MGP_FVBNJ_G0015275	unclassified non-coding RNA gene	Chr2:72154286-72159398 (+)
LP/J	MGP_LPJ_G0015348	unclassified non-coding RNA gene	Chr2:76003306-76010046 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015301	unclassified non-coding RNA gene	Chr2:83164081-83169185 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015863	unclassified non-coding RNA gene	Chr2:75279011-75284117 (+)
PWK/PhJ	MGP_PWKPhJ_G0014533	unclassified non-coding RNA gene	Chr2:72725307-72731485 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014321	unclassified non-coding RNA gene	Chr2:75512096-75518231 (+)
WSB/EiJ	MGP_WSBEiJ_G0014852	unclassified non-coding RNA gene	Chr2:75729580-75734677 (+)

Homology

• Gene Tree
  Gm13657
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13657
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  6

• Ensembl
  ENSMUSG00000086813 (Evidence)
• NCBI Gene
  102638051

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086813	Ensembl Gene Model | MGI Sequence Detail	5156	C57BL/6J
transcript	ENSMUST00000135682	Ensembl | MGI Sequence Detail	1973	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13657:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18468	Chr2:75607519-75607537 (+)	33 bp