Gm13672 Pseudogene Detail

Summary

• Symbol
  Gm13672
• Name
  predicted gene 13672

• Feature Type
  pseudogene
• IDs
  MGI:3650039
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:74462184-74462642 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.13 cM

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650039	pseudogene	Chr2:74462184-74462642 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011702	pseudogene	Chr2:74945640-74946098 (+)
A/J	MGP_AJ_G0011698	pseudogene	Chr2:72013261-72013719 (+)
AKR/J	MGP_AKRJ_G0011664	pseudogene	Chr2:73963818-73964276 (+)
BALB/cJ	MGP_BALBcJ_G0011679	pseudogene	Chr2:72199766-72200224 (+)
C3H/HeJ	MGP_C3HHeJ_G0011565	pseudogene	Chr2:74154191-74154649 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011973	pseudogene	Chr2:77178061-77178519 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010484	pseudogene	Chr2:69436281-69436734 (+)
CAST/EiJ	MGP_CASTEiJ_G0011351	pseudogene	Chr2:74461023-74461481 (+)
CBA/J	MGP_CBAJ_G0011538	pseudogene	Chr2:79998453-79998911 (+)
DBA/2J	MGP_DBA2J_G0011590	pseudogene	Chr2:71620146-71620604 (+)
FVB/NJ	MGP_FVBNJ_G0011595	pseudogene	Chr2:71006236-71006694 (+)
LP/J	MGP_LPJ_G0011658	pseudogene	Chr2:74810363-74810821 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011595	pseudogene	Chr2:81912699-81913157 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011966	pseudogene	Chr2:74078807-74079265 (+)
PWK/PhJ	MGP_PWKPhJ_G0011208	pseudogene	Chr2:71548073-71548531 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011031	pseudogene	Chr2:74315692-74316169 (+)
WSB/EiJ	MGP_WSBEiJ_G0011379	pseudogene	Chr2:74516750-74517208 (+)

Homology

• Gene Tree
  Gm13672
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Targeted
  6
• Genomic Mutations
  7 involving Gm13672
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082973 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082973	Ensembl Gene Model | MGI Sequence Detail	459	C57BL/6J
transcript	ENSMUST00000117554	Ensembl | MGI Sequence Detail	459	Not Applicable

References

• Summaries
  All 19

  Phenotypes 16
• Earliest
  J:54543 Kondo T, et al., Breaking colinearity in the mouse HoxD complex. Cell. 1999 Apr 30;97(3):407-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087