Gm11945 Pseudogene Detail

Summary

• Symbol
  Gm11945
• Name
  predicted gene 11945

• Feature Type
  pseudogene
• IDs
  MGI:3650072
  NCBI Gene: 108167876
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:3420902-3421377 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.43 cM

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650072	pseudogene	Chr11:3420819-3421377 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010557	pseudogene	Chr11:339092-339567 (-)
A/J	MGP_AJ_G0010550	pseudogene	Chr11:387689-388164 (-)
AKR/J	MGP_AKRJ_G0010510	pseudogene	Chr11:403890-404365 (-)
BALB/cJ	MGP_BALBcJ_G0010524	pseudogene	Chr11:357775-358250 (-)
C3H/HeJ	MGP_C3HHeJ_G0010447	pseudogene	Chr11:338839-339314 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010792	pseudogene	Chr11:401262-401737 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011754	pseudogene	Chr5:129303977-129304463 (+)
CAST/EiJ	MGP_CASTEiJ_G0010273	pseudogene	Chr11:292869-293344 (-)
CBA/J	MGP_CBAJ_G0010419	pseudogene	Chr11:578320-578795 (-)
DBA/2J	MGP_DBA2J_G0010449	pseudogene	Chr11:306704-307179 (-)
FVB/NJ	MGP_FVBNJ_G0010467	pseudogene	Chr11:337929-338404 (-)
LP/J	MGP_LPJ_G0010539	pseudogene	Chr11:438980-439455 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010443	pseudogene	Chr11:326826-327301 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010771	pseudogene	Chr11:412781-413256 (-)
PWK/PhJ	MGP_PWKPhJ_G0010173	pseudogene	Chr11:280725-281283 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009987	pseudogene	Chr11:367544-368020 (-)
WSB/EiJ	MGP_WSBEiJ_G0010334	pseudogene	Chr11:290008-290483 (-)

Homology

• Gene Tree
  Gm11945
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000081059 (Evidence)
• NCBI Gene
  108167876

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081059	Ensembl Gene Model | MGI Sequence Detail	476	C57BL/6J
transcript	ENSMUST00000120551	Ensembl | MGI Sequence Detail	476	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11945:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106475	Chr11:3421496-3421522 (-)	-132 bp