Arhgap27os3 Gene Detail

Summary

• Symbol
  Arhgap27os3
• Name
  Rho GTPase activating protein 27, opposite strand 3
• Synonyms
  Gm11648

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3650159
  NCBI Gene: 653030
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:103235579-103240950 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 67.05 cM

Strain
Comparison

• SNPs within 2kb
  307 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650159	antisense lncRNA gene	Chr11:103235579-103240952 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003072	antisense lncRNA gene	Chr11:106411446-106417062 (+)
A/J	MGP_AJ_G0003049	antisense lncRNA gene	Chr11:101896729-101902284 (+)
AKR/J	MGP_AKRJ_G0003030	antisense lncRNA gene	Chr11:105035157-105040425 (+)
BALB/cJ	MGP_BALBcJ_G0003036	antisense lncRNA gene	Chr11:102362561-102368106 (+)
C3H/HeJ	MGP_C3HHeJ_G0002992	antisense lncRNA gene	Chr11:105261980-105267172 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003178	antisense lncRNA gene	Chr11:109716100-109721475 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002716	antisense lncRNA gene	Chr11:99304556-99309987 (+)
CAST/EiJ	MGP_CASTEiJ_G0002962	antisense lncRNA gene	Chr11:106281011-106286348 (+)
CBA/J	MGP_CBAJ_G0002989	antisense lncRNA gene	Chr11:114282528-114288112 (+)
DBA/2J	MGP_DBA2J_G0002995	antisense lncRNA gene	Chr11:101403486-101408668 (+)
FVB/NJ	MGP_FVBNJ_G0003014	antisense lncRNA gene	Chr11:100948417-100953820 (+)
LP/J	MGP_LPJ_G0003071	antisense lncRNA gene	Chr11:106923879-106929286 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003002	antisense lncRNA gene	Chr11:113656365-113661891 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003182	antisense lncRNA gene	Chr11:105422440-105428083 (+)
PWK/PhJ	MGP_PWKPhJ_G0002920	antisense lncRNA gene	Chr11:102479503-102484705 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002864	antisense lncRNA gene	Chr11:105179751-105184790 (+)
WSB/EiJ	MGP_WSBEiJ_G0002992	antisense lncRNA gene	Chr11:105424410-105429594 (+)

Homology

• Gene Tree
  Arhgap27os3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Arhgap27os3
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085887 (Evidence)
• NCBI Gene
  653030

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085887	Ensembl Gene Model | MGI Sequence Detail	5372	C57BL/6J
transcript	ENSMUST00000124462	Ensembl | MGI Sequence Detail	2729	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Arhgap27os3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105338	Chr11:103235557-103235585 (+)	-8 bp
Tssr105339	Chr11:103235591-103235638 (+)	36 bp
Tssr105340	Chr11:103237990-103238021 (+)	2,427 bp