Gm13423 Pseudogene Detail

Summary

• Symbol
  Gm13423
• Name
  predicted gene 13423

• Feature Type
  pseudogene
• IDs
  MGI:3650165
  NCBI Gene: 100416062
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:23091952-23092924 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 15.25 cM

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650165	pseudogene	Chr2:23091952-23093695 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011559	pseudogene	Chr2:20951765-20953397 (+)
A/J	MGP_AJ_G0011557	pseudogene	Chr2:20106752-20108394 (+)
AKR/J	MGP_AKRJ_G0011522	pseudogene	Chr2:20821643-20823288 (+)
BALB/cJ	MGP_BALBcJ_G0011537	pseudogene	Chr2:20211837-20213503 (+)
C3H/HeJ	MGP_C3HHeJ_G0011422	pseudogene	Chr2:20738278-20739918 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011828	pseudogene	Chr2:21555794-21557440 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011221	pseudogene	Chr2:20655042-20657625 (+)
CBA/J	MGP_CBAJ_G0011395	pseudogene	Chr2:22377441-22379078 (+)
DBA/2J	MGP_DBA2J_G0011453	pseudogene	Chr2:19995124-19996770 (+)
FVB/NJ	MGP_FVBNJ_G0011453	pseudogene	Chr2:19775276-19776907 (+)
LP/J	MGP_LPJ_G0011517	pseudogene	Chr2:20885455-20887096 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011452	pseudogene	Chr2:22450349-22452001 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011817	pseudogene	Chr2:20723387-20725027 (+)
PWK/PhJ	MGP_PWKPhJ_G0011080	pseudogene	Chr2:19826864-19828540 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011245	pseudogene	Chr2:20847884-20849531 (+)

Homology

• Gene Tree
  Gm13423
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000081648 (Evidence)
• NCBI Gene
  100416062

Representative Sequences			Length	Strain/Species
genomic	100416062	NCBI Gene Model | MGI Sequence Detail	973	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13423:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16549	Chr2:23091948-23091954 (+)	-1 bp