Gm13498 Pseudogene Detail

Summary

• Symbol
  Gm13498
• Name
  predicted gene 13498

• Feature Type
  pseudogene
• IDs
  MGI:3650381
  NCBI Gene: 227885
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:50799696-50801858 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 29.43 cM

Strain
Comparison

• SNPs within 2kb
  329 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650381	pseudogene	Chr2:50799696-50801861 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011630	pseudogene	Chr2:50153654-50161250 (+)
A/J	MGP_AJ_G0011629	pseudogene	Chr2:48244961-48247591 (+)
AKR/J	MGP_AKRJ_G0011593	pseudogene	Chr2:49626473-49628344 (+)
BALB/cJ	MGP_BALBcJ_G0011609	pseudogene	Chr2:48346543-48348708 (+)
C3H/HeJ	MGP_C3HHeJ_G0011495	pseudogene	Chr2:49607480-49609351 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011902	pseudogene	Chr2:51649948-51652223 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010426	pseudogene	Chr2:46258788-46260621 (+)
CAST/EiJ	MGP_CASTEiJ_G0011290	pseudogene	Chr2:49694169-49696018 (+)
CBA/J	MGP_CBAJ_G0011466	pseudogene	Chr2:53585639-53587510 (+)
DBA/2J	MGP_DBA2J_G0011523	pseudogene	Chr2:47872879-47874750 (+)
FVB/NJ	MGP_FVBNJ_G0011524	pseudogene	Chr2:47593596-47595468 (+)
LP/J	MGP_LPJ_G0011588	pseudogene	Chr2:50064672-50066837 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011523	pseudogene	Chr2:54678664-54680535 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011893	pseudogene	Chr2:49524506-49526671 (+)
PWK/PhJ	MGP_PWKPhJ_G0011148	pseudogene	Chr2:47758279-47760246 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010969	pseudogene	Chr2:49694447-49696298 (+)
WSB/EiJ	MGP_WSBEiJ_G0011314	pseudogene	Chr2:49808035-49809906 (+)

Homology

• Gene Tree
  Gm13498
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13498
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000083270 (Evidence)
• NCBI Gene
  227885

Representative Sequences			Length	Strain/Species
genomic	227885	NCBI Gene Model | MGI Sequence Detail	2163	C57BL/6J
transcript	NR_033595	RefSeq | MGI Sequence Detail	2163	Not Specified

Molecular
Reagents

• 
  

  Microarray probesets 2

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm13498:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17700	Chr2:50799593-50799596 (+)	-101 bp
Tssr17701	Chr2:50800195-50800200 (+)	502 bp