Gm13324 Gene Detail

Summary

• Symbol
  Gm13324
• Name
  predicted gene 13324

• Feature Type
  lncRNA gene
• IDs
  MGI:3650422
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:17563871-17564809 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 12.56 cM

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650422	lncRNA gene	Chr2:17563871-17564809 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003509	antisense lncRNA gene	Chr2:15196733-15197671 (+)
A/J	MGP_AJ_G0003489	antisense lncRNA gene	Chr2:14591040-14591978 (+)
AKR/J	MGP_AKRJ_G0003468	antisense lncRNA gene	Chr2:15051934-15052872 (+)
BALB/cJ	MGP_BALBcJ_G0003478	antisense lncRNA gene	Chr2:14621188-14622126 (+)
C3H/HeJ	MGP_C3HHeJ_G0003426	antisense lncRNA gene	Chr2:14979818-14980756 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003616	antisense lncRNA gene	Chr2:15564067-15565005 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003126	antisense lncRNA gene	Chr2:14032755-14033694 (+)
CAST/EiJ	MGP_CASTEiJ_G0003389	antisense lncRNA gene	Chr2:14950283-14951225 (+)
CBA/J	MGP_CBAJ_G0003423	antisense lncRNA gene	Chr2:16263133-16264071 (+)
DBA/2J	MGP_DBA2J_G0003431	antisense lncRNA gene	Chr2:14532800-14533738 (+)
FVB/NJ	MGP_FVBNJ_G0003450	antisense lncRNA gene	Chr2:14325737-14326675 (+)
LP/J	MGP_LPJ_G0003504	antisense lncRNA gene	Chr2:15075223-15076161 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003438	antisense lncRNA gene	Chr2:16231268-16232206 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003619	antisense lncRNA gene	Chr2:15012252-15013190 (+)
PWK/PhJ	MGP_PWKPhJ_G0003345	antisense lncRNA gene	Chr2:14362781-14363719 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003290	antisense lncRNA gene	Chr2:15122279-15123215 (+)
WSB/EiJ	MGP_WSBEiJ_G0003424	antisense lncRNA gene	Chr2:15118007-15118949 (+)

Homology

• Gene Tree
  Gm13324
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085100 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085100	Ensembl Gene Model | MGI Sequence Detail	939	C57BL/6J
transcript	ENSMUST00000148607	Ensembl | MGI Sequence Detail	569	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13324:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16353	Chr2:17563865-17563876 (+)	0 bp