Gm14089 Gene Detail

Summary

• Symbol
  Gm14089
• Name
  predicted gene 14089

• Feature Type
  lncRNA gene
• IDs
  MGI:3650468
  NCBI Gene: 102635954
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:118827549-118831165 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 59.80 cM

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650468	lncRNA gene	Chr2:118827492-118837161 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003623	antisense lncRNA gene	Chr2:121722843-121726475 (+)
A/J	MGP_AJ_G0003605	antisense lncRNA gene	Chr2:116767432-116771031 (+)
AKR/J	MGP_AKRJ_G0003583	antisense lncRNA gene	Chr2:120038138-120041731 (+)
BALB/cJ	MGP_BALBcJ_G0003594	antisense lncRNA gene	Chr2:117031451-117035051 (+)
C3H/HeJ	MGP_C3HHeJ_G0003541	antisense lncRNA gene	Chr2:120507087-120510681 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003733	antisense lncRNA gene	Chr2:125719104-125722760 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003241	antisense lncRNA gene	Chr2:111818673-111822450 (+)
CAST/EiJ	MGP_CASTEiJ_G0003504	antisense lncRNA gene	Chr2:120810697-120814294 (+)
CBA/J	MGP_CBAJ_G0003538	antisense lncRNA gene	Chr2:130152004-130155599 (+)
DBA/2J	MGP_DBA2J_G0003546	antisense lncRNA gene	Chr2:116197715-116201313 (+)
FVB/NJ	MGP_FVBNJ_G0003566	antisense lncRNA gene	Chr2:115015659-115019256 (+)
LP/J	MGP_LPJ_G0003623	antisense lncRNA gene	Chr2:122035378-122039012 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003554	antisense lncRNA gene	Chr2:134516607-134520257 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003734	antisense lncRNA gene	Chr2:120162127-120165721 (+)
PWK/PhJ	MGP_PWKPhJ_G0003459	antisense lncRNA gene	Chr2:115749922-115753569 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003402	antisense lncRNA gene	Chr2:119343225-119347128 (+)
WSB/EiJ	MGP_WSBEiJ_G0003538	antisense lncRNA gene	Chr2:120992309-120995906 (+)

Homology

• Gene Tree
  Gm14089
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm14089
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000084802 (Evidence)
• NCBI Gene
  102635954

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084802	Ensembl Gene Model | MGI Sequence Detail	3617	C57BL/6J
transcript	ENSMUST00000130025	Ensembl | MGI Sequence Detail	318	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm14089:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19595	Chr2:118827525-118827528 (+)	-22 bp