Gm13134 Gene Detail

Summary

• Symbol
  Gm13134
• Name
  predicted gene 13134

• Feature Type
  lncRNA gene
• IDs
  MGI:3650641
  NCBI Gene: 100043342
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:154685654-154688659 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 84.69 cM

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650641	lncRNA gene	Chr4:154685654-154688659 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004016	antisense lncRNA gene	Chr4:158886040-158889045 (+)
A/J	MGP_AJ_G0003997	antisense lncRNA gene	Chr4:152212058-152215063 (+)
AKR/J	MGP_AKRJ_G0003974	antisense lncRNA gene	Chr4:156366782-156369787 (+)
BALB/cJ	MGP_BALBcJ_G0003983	antisense lncRNA gene	Chr4:152681542-152684547 (+)
C3H/HeJ	MGP_C3HHeJ_G0003930	antisense lncRNA gene	Chr4:156903527-156906532 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004132	antisense lncRNA gene	Chr4:164553563-164556568 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003613	antisense lncRNA gene	Chr4:144512181-144515109 (+)
CAST/EiJ	MGP_CASTEiJ_G0003893	antisense lncRNA gene	Chr4:154319159-154322164 (+)
CBA/J	MGP_CBAJ_G0003923	antisense lncRNA gene	Chr4:169491598-169494603 (+)
DBA/2J	MGP_DBA2J_G0003939	antisense lncRNA gene	Chr4:152239553-152242557 (+)
FVB/NJ	MGP_FVBNJ_G0003958	antisense lncRNA gene	Chr4:151450090-151454032 (+)
LP/J	MGP_LPJ_G0004019	antisense lncRNA gene	Chr4:158801509-158804514 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003946	antisense lncRNA gene	Chr4:172392216-172395221 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004126	antisense lncRNA gene	Chr4:156947071-156949997 (+)
PWK/PhJ	MGP_PWKPhJ_G0003847	antisense lncRNA gene	Chr4:148345507-148348430 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003792	antisense lncRNA gene	Chr4:151236451-151239378 (+)
WSB/EiJ	MGP_WSBEiJ_G0003929	antisense lncRNA gene	Chr4:157109976-157112982 (+)

Homology

• Gene Tree
  Gm13134
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  1
• Targeted
  3
• Genomic Mutations
  3 involving Gm13134
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084987 (Evidence)
• NCBI Gene
  100043342

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084987	Ensembl Gene Model | MGI Sequence Detail	3006	C57BL/6J
transcript	ENSMUST00000132106	Ensembl | MGI Sequence Detail	738	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16

TSS for Gm13134:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40589	Chr4:154685756-154685759 (+)	104 bp