Gm11978 Pseudogene Detail

Summary

• Symbol
  Gm11978
• Name
  predicted gene 11978
• Synonyms
  100041311

• Feature Type
  pseudogene
• IDs
  MGI:3650695
  NCBI Gene: 100041311
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:6600374-6600839 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 4.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650695	pseudogene	Chr11:6600148-6610236 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039657	pseudogene	Chr11:3801687-3811662 (-)
A/J	MGP_AJ_G0039656	pseudogene	Chr11:3629163-3639455 (-)
AKR/J	MGP_AKRJ_G0039581	pseudogene	Chr11:3811368-3821484 (-)
BALB/cJ	MGP_BALBcJ_G0039630	pseudogene	Chr11:3638441-3648478 (-)
C3H/HeJ	MGP_C3HHeJ_G0039292	pseudogene	Chr11:3694781-3704755 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040181	pseudogene	Chr11:3891565-3901605 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036827	pseudogene	Chr11:3514845-3526396 (-)
CAST/EiJ	MGP_CASTEiJ_G0038409	pseudogene	Chr11:3685987-3696809 (-)
CBA/J	MGP_CBAJ_G0039259	pseudogene	Chr11:4330381-4345491 (-)
DBA/2J	MGP_DBA2J_G0039452	pseudogene	Chr11:3538055-3548515 (-)
FVB/NJ	MGP_FVBNJ_G0039409	pseudogene	Chr11:3567918-3578114 (-)
LP/J	MGP_LPJ_G0039495	pseudogene	Chr11:3862045-3872444 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039413	pseudogene	Chr11:3876232-3886372 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040287	pseudogene	Chr11:3837690-3847690 (-)
PWK/PhJ	MGP_PWKPhJ_G0038085	pseudogene	Chr11:3577916-3589361 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037835	pseudogene	Chr11:3783753-3795518 (-)
WSB/EiJ	MGP_WSBEiJ_G0038643	pseudogene	Chr11:3667007-3679351 (-)

Homology

• Gene Tree
  Gm11978
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086373 (Evidence)
• NCBI Gene
  100041311

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086373	Ensembl Gene Model | MGI Sequence Detail	466	C57BL/6J
transcript	ENSMUST00000122315	Ensembl | MGI Sequence Detail	466	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3650693, MGI:3781445

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;