Gm11981 MGI Mouse Gene Detail - MGI:3650697

Symbol

Gm11981
Name

predicted gene 11981

Feature Type

lncRNA gene
IDs

MGI:3650697
NCBI Gene: 626419
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr11:6666001-6670037 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 4.63 cM

SNPs within 2kb

227 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650697	lncRNA gene	Chr11:6661794-6670091 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015152	unclassified non-coding RNA gene	Chr11:3874564-3878593 (-)
A/J	MGP_AJ_G0015126	unclassified non-coding RNA gene	Chr11:3696791-3700826 (-)
AKR/J	MGP_AKRJ_G0015089	unclassified non-coding RNA gene	Chr11:3877625-3881656 (-)
BALB/cJ	MGP_BALBcJ_G0015089	unclassified non-coding RNA gene	Chr11:3705191-3709221 (-)
C3H/HeJ	MGP_C3HHeJ_G0014912	unclassified non-coding RNA gene	Chr11:3764396-3771651 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015545	unclassified non-coding RNA gene	Chr11:3957234-3961329 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013291	unclassified non-coding RNA gene	Chr11:3582970-3587904 (-)
CAST/EiJ	MGP_CASTEiJ_G0014466	unclassified non-coding RNA gene	Chr11:3756810-3760892 (-)
CBA/J	MGP_CBAJ_G0014891	unclassified non-coding RNA gene	Chr11:4414133-4418207 (-)
DBA/2J	MGP_DBA2J_G0014984	unclassified non-coding RNA gene	Chr11:3604955-3608983 (-)
FVB/NJ	MGP_FVBNJ_G0014995	unclassified non-coding RNA gene	Chr11:3641437-3645477 (-)
LP/J	MGP_LPJ_G0015066	unclassified non-coding RNA gene	Chr11:3927913-3931945 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015022	unclassified non-coding RNA gene	Chr11:3947109-3951144 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015584	unclassified non-coding RNA gene	Chr11:3907593-3911621 (-)
PWK/PhJ	MGP_PWKPhJ_G0014258	unclassified non-coding RNA gene	Chr11:3651007-3655088 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014046	unclassified non-coding RNA gene	Chr11:3854594-3858643 (-)
WSB/EiJ	MGP_WSBEiJ_G0014569	unclassified non-coding RNA gene	Chr11:3738848-3742904 (-)

less

Gene Tree

Gm11981

less

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

2

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

less

All Sequences

30
RefSeq

1

Ensembl

ENSMUSG00000086808 (Evidence)
NCBI Gene

626419

Representative Sequences				Length	Strain/Species	Flank
	genomic	626419	NCBI Gene Model \| MGI Sequence Detail	4037	C57BL/6J	± kb
	transcript	NR_046025	RefSeq \| MGI Sequence Detail	664	C57BL/6

less

All nucleic 2

cDNA 2

Summaries

All 8
Earliest

J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
Latest

J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm11981:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106767	Chr11:6670069-6670074 (-)	-35 bp
Tssr106766	Chr11:6670016-6670063 (-)	-3 bp
Tssr106765	Chr11:6669916-6669920 (-)	119 bp
Tssr106764	Chr11:6667138-6667183 (-)	2,876 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/17/2024 MGI 6.24