Gm11413 Gene Detail

Summary

• Symbol
  Gm11413
• Name
  predicted gene 11413

• Feature Type
  lncRNA gene
• IDs
  MGI:3650701
  NCBI Gene: 790913
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:83296554-83308905 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 39.46 cM

Strain
Comparison

• SNPs within 2kb
  447 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650701	lncRNA gene	Chr4:83296554-83308905 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003913	antisense lncRNA gene	Chr4:82970660-82985732 (-)
A/J	MGP_AJ_G0003893	antisense lncRNA gene	Chr4:80081600-80097927 (-)
AKR/J	MGP_AKRJ_G0003870	antisense lncRNA gene	Chr4:82173115-82185444 (-)
BALB/cJ	MGP_BALBcJ_G0003879	antisense lncRNA gene	Chr4:80313225-80329626 (-)
C3H/HeJ	MGP_C3HHeJ_G0003826	antisense lncRNA gene	Chr4:82761280-82773607 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004027	antisense lncRNA gene	Chr4:86243417-86256326 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003518	antisense lncRNA gene	Chr4:76043821-76063005 (-)
CAST/EiJ	MGP_CASTEiJ_G0003790	antisense lncRNA gene	Chr4:80670401-80688630 (-)
CBA/J	MGP_CBAJ_G0003819	antisense lncRNA gene	Chr4:88921524-88933839 (-)
DBA/2J	MGP_DBA2J_G0003836	antisense lncRNA gene	Chr4:79862513-79876819 (-)
FVB/NJ	MGP_FVBNJ_G0003854	antisense lncRNA gene	Chr4:78882655-78894990 (-)
LP/J	MGP_LPJ_G0003915	antisense lncRNA gene	Chr4:83338950-83355002 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003842	antisense lncRNA gene	Chr4:94005012-94018262 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004022	antisense lncRNA gene	Chr4:82223398-82235727 (-)
PWK/PhJ	MGP_PWKPhJ_G0003745	antisense lncRNA gene	Chr4:78209918-78222796 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003691	antisense lncRNA gene	Chr4:79745293-79760606 (-)
WSB/EiJ	MGP_WSBEiJ_G0003825	antisense lncRNA gene	Chr4:82393885-82406233 (-)

Homology

• Gene Tree
  Gm11413
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm11413
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086321 (Evidence)
• NCBI Gene
  790913

Representative Sequences			Length	Strain/Species
genomic	790913	NCBI Gene Model | MGI Sequence Detail	12352	C57BL/6J
transcript	NR_045450	RefSeq | MGI Sequence Detail	1461	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm11413:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42294	Chr4:83308220-83308257 (-)	666 bp