Gm11809 Pseudogene Detail

Summary

• Symbol
  Gm11809
• Name
  predicted gene 11809

• Feature Type
  pseudogene
• IDs
  MGI:3650709
  NCBI Gene: 666760
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:8672633-8673582 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 3.67 cM

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650709	pseudogene	Chr4:8672435-8673582 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012501	pseudogene	Chr4:5253514-5254463 (-)
A/J	MGP_AJ_G0012495	pseudogene	Chr4:5147212-5148161 (-)
AKR/J	MGP_AKRJ_G0012459	pseudogene	Chr4:5189718-5190667 (-)
BALB/cJ	MGP_BALBcJ_G0012478	pseudogene	Chr4:5132423-5133372 (-)
C3H/HeJ	MGP_C3HHeJ_G0012340	pseudogene	Chr4:5356301-5357250 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012791	pseudogene	Chr4:5552049-5552998 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012109	pseudogene	Chr4:5191312-5192260 (-)
CBA/J	MGP_CBAJ_G0012320	pseudogene	Chr4:5630723-5631672 (-)
DBA/2J	MGP_DBA2J_G0012374	pseudogene	Chr4:5116897-5117846 (-)
FVB/NJ	MGP_FVBNJ_G0012375	pseudogene	Chr4:4985862-4986811 (-)
LP/J	MGP_LPJ_G0012448	pseudogene	Chr4:5266157-5267106 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012383	pseudogene	Chr4:5866474-5867423 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012795	pseudogene	Chr4:5185260-5186209 (-)
PWK/PhJ	MGP_PWKPhJ_G0011943	pseudogene	Chr4:5115991-5116932 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011763	pseudogene	Chr4:5133257-5134207 (-)
WSB/EiJ	MGP_WSBEiJ_G0012133	pseudogene	Chr4:5277502-5278451 (-)

Homology

• Gene Tree
  Gm11809
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082122 (Evidence)
• NCBI Gene
  666760

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082122	Ensembl Gene Model | MGI Sequence Detail	950	C57BL/6J
transcript	ENSMUST00000120923	Ensembl | MGI Sequence Detail	950	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11809:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40889	Chr4:8673720-8673729 (-)	-143 bp