Gm12848 Pseudogene Detail

Summary

• Symbol
  Gm12848
• Name
  predicted gene 12848

• Feature Type
  pseudogene
• IDs
  MGI:3650820
  NCBI Gene: 546843
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:115509838-115510738 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.06 cM

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650820	pseudogene	Chr4:115509586-115510738 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012831	pseudogene	Chr4:116487480-116488571 (+)
A/J	MGP_AJ_G0012816	pseudogene	Chr4:112053623-112054714 (+)
AKR/J	MGP_AKRJ_G0012786	pseudogene	Chr4:114465217-114466308 (+)
BALB/cJ	MGP_BALBcJ_G0012797	pseudogene	Chr4:112668087-112669178 (+)
C3H/HeJ	MGP_C3HHeJ_G0012653	pseudogene	Chr4:116011551-116012642 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013133	pseudogene	Chr4:121004135-121005226 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011393	pseudogene	Chr4:106143866-106144709 (+)
CAST/EiJ	MGP_CASTEiJ_G0010570	pseudogene	Chr11:114758927-114759624 (+)
CBA/J	MGP_CBAJ_G0012630	pseudogene	Chr4:124280475-124281566 (+)
DBA/2J	MGP_DBA2J_G0012692	pseudogene	Chr4:112703010-112704101 (+)
FVB/NJ	MGP_FVBNJ_G0012210	pseudogene	Chr3:99189175-99190005 (-)
LP/J	MGP_LPJ_G0012766	pseudogene	Chr4:116736561-116737652 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012705	pseudogene	Chr4:129333989-129335080 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013144	pseudogene	Chr4:115625919-115627010 (+)
PWK/PhJ	MGP_PWKPhJ_G0010460	pseudogene	Chr11:110615432-110616231 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010275	pseudogene	Chr11:113643366-113644078 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12848
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12848
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082043 (Evidence)
• NCBI Gene
  546843

Representative Sequences			Length	Strain/Species
genomic	546843	NCBI Gene Model | MGI Sequence Detail	901	C57BL/6J
transcript	KY467436	GenBank | ENA | DDBJ | MGI Sequence Detail	842	ZRU/MplStud

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12848:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38463	Chr4:115509516-115509517 (+)	-321 bp