Trav8-2 Pseudogene Detail

Summary

• Symbol
  Trav8-2
• Name
  T-cell receptor alpha variable 8-2
• Synonyms
  Gm14031

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:3650859
  NCBI Gene: 193587
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:53975832-53976295 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.49 cM

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650859	pseudogenic gene segment	Chr14:53975832-53976295 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0002586	pseudogenic gene segment	Chr14:45899165-45899735 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0002574	pseudogenic gene segment	Chr14:45978482-45979053 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0002564	pseudogenic gene segment	Chr14:45532956-45533827 (+)
LP/J	MGP_LPJ_G0002614	pseudogenic gene segment	Chr14:48123407-48124480 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Trav8-2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav8-2
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  1

• Ensembl
  ENSMUSG00000085302 (Evidence)
• NCBI Gene
  193587

Representative Sequences			Length	Strain/Species
genomic	193587	NCBI Gene Model | MGI Sequence Detail	464	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Trav8-2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125495	Chr14:53975760-53975764 (+)	-70 bp