Rps13-ps6 Pseudogene Detail

Summary

• Symbol
  Rps13-ps6
• Name
  ribosomal protein S13, pseudogene 6
• Synonyms
  Gm11654

• Feature Type
  pseudogene
• IDs
  MGI:3650996
  NCBI Gene: 115489478
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:143697569-143697996 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 70.89 cM

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650996	pseudogene	Chr2:143697510-143698042 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011894	pseudogene	Chr2:147894744-147895171 (+)
A/J	MGP_AJ_G0011885	pseudogene	Chr2:141930239-141930666 (+)
AKR/J	MGP_AKRJ_G0011852	pseudogene	Chr2:145999849-146000276 (+)
BALB/cJ	MGP_BALBcJ_G0011862	pseudogene	Chr2:142363196-142363623 (+)
C3H/HeJ	MGP_C3HHeJ_G0011745	pseudogene	Chr2:146539313-146539740 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012165	pseudogene	Chr2:152357486-152357913 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011533	pseudogene	Chr2:146863630-146864057 (+)
CBA/J	MGP_CBAJ_G0011720	pseudogene	Chr2:157897895-157898322 (+)
DBA/2J	MGP_DBA2J_G0011776	pseudogene	Chr2:141221894-141222321 (+)
FVB/NJ	MGP_FVBNJ_G0011778	pseudogene	Chr2:139806164-139806591 (+)
LP/J	MGP_LPJ_G0011842	pseudogene	Chr2:148072097-148072524 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011783	pseudogene	Chr2:162127444-162127871 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012161	pseudogene	Chr2:145997771-145998198 (+)
PWK/PhJ	MGP_PWKPhJ_G0011380	pseudogene	Chr2:140867572-140867999 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011198	pseudogene	Chr2:145045323-145045749 (+)
WSB/EiJ	MGP_WSBEiJ_G0011552	pseudogene	Chr2:147010683-147011110 (+)

Homology

• Gene Tree
  Rps13-ps6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rps13-ps6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082987 (Evidence)
• NCBI Gene
  115489478

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082987	Ensembl Gene Model | MGI Sequence Detail	428	C57BL/6J
transcript	ENSMUST00000120038	Ensembl | MGI Sequence Detail	428	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Rps13-ps6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20507	Chr2:143697534-143697540 (+)	-32 bp