Gm12842 Pseudogene Detail

Summary

• Symbol
  Gm12842
• Name
  predicted gene 12842

• Feature Type
  pseudogene
• IDs
  MGI:3651050
  NCBI Gene: 606540
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:117682378-117682853 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.60 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651050	pseudogene	Chr4:117682176-117682891 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012844	pseudogene	Chr4:118827287-118827762 (-)
A/J	MGP_AJ_G0012828	pseudogene	Chr4:114242458-114242934 (-)
AKR/J	MGP_AKRJ_G0012798	pseudogene	Chr4:116744262-116744738 (-)
BALB/cJ	MGP_BALBcJ_G0012807	pseudogene	Chr4:114877863-114878338 (-)
C3H/HeJ	MGP_C3HHeJ_G0012666	pseudogene	Chr4:118324132-118324607 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013146	pseudogene	Chr4:123406806-123407281 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011404	pseudogene	Chr4:108269787-108270263 (-)
CAST/EiJ	MGP_CASTEiJ_G0012416	pseudogene	Chr4:115549836-115550311 (-)
CBA/J	MGP_CBAJ_G0012642	pseudogene	Chr4:126775282-126775757 (-)
DBA/2J	MGP_DBA2J_G0012703	pseudogene	Chr4:114859857-114860333 (-)
FVB/NJ	MGP_FVBNJ_G0012706	pseudogene	Chr4:113373753-113374228 (-)
LP/J	MGP_LPJ_G0012780	pseudogene	Chr4:119013408-119013883 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012718	pseudogene	Chr4:131694335-131694811 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013159	pseudogene	Chr4:117889182-117889657 (-)
PWK/PhJ	MGP_PWKPhJ_G0012236	pseudogene	Chr4:111680012-111680488 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012046	pseudogene	Chr4:114206591-114207063 (-)
WSB/EiJ	MGP_WSBEiJ_G0012444	pseudogene	Chr4:117774111-117774586 (-)

Homology

• Gene Tree
  Gm12842
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12842
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083507 (Evidence)
• NCBI Gene
  606540

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083507	Ensembl Gene Model | MGI Sequence Detail	476	C57BL/6J
transcript	ENSMUST00000117298	Ensembl | MGI Sequence Detail	476	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12842:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42993	Chr4:117682888-117682893 (-)	-38 bp