Bach2it1 Gene Detail

Summary

• Symbol
  Bach2it1
• Name
  BTB and CNC homology 2, intronic transcript 1
• Synonyms
  Gm11932

• Feature Type
  sense intronic lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3651084
  NCBI Gene: 102635275
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr4:32249367-32265839 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 14.02 cM

Strain
Comparison

• SNPs within 2kb
  486 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651084	sense intronic lncRNA gene	Chr4:32249367-32265839 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037008	sense intronic lncRNA gene	Chr4:29698807-29712903 (+)
A/J	MGP_AJ_G0036996	sense intronic lncRNA gene	Chr4:28646190-28661605 (+)
AKR/J	MGP_AKRJ_G0036944	sense intronic lncRNA gene	Chr4:29400709-29414962 (+)
BALB/cJ	MGP_BALBcJ_G0036987	sense intronic lncRNA gene	Chr4:28893169-28907258 (+)
C3H/HeJ	MGP_C3HHeJ_G0036674	sense intronic lncRNA gene	Chr4:29679022-29693237 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037500	sense intronic lncRNA gene	Chr4:30878273-30892328 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034551	sense intronic lncRNA gene	Chr4:26702064-26716133 (+)
CAST/EiJ	MGP_CASTEiJ_G0035862	sense intronic lncRNA gene	Chr4:29437396-29451487 (+)
CBA/J	MGP_CBAJ_G0036649	sense intronic lncRNA gene	Chr4:31848319-31862379 (+)
DBA/2J	MGP_DBA2J_G0036824	sense intronic lncRNA gene	Chr4:28659913-28673970 (+)
FVB/NJ	MGP_FVBNJ_G0036774	sense intronic lncRNA gene	Chr4:28075395-28089336 (+)
LP/J	MGP_LPJ_G0036871	sense intronic lncRNA gene	Chr4:29789660-29803715 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036782	sense intronic lncRNA gene	Chr4:34478522-34492580 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037617	sense intronic lncRNA gene	Chr4:29385718-29399754 (+)
PWK/PhJ	MGP_PWKPhJ_G0035554	sense intronic lncRNA gene	Chr4:28608720-28623404 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035363	sense intronic lncRNA gene	Chr4:29259322-29274794 (+)
WSB/EiJ	MGP_WSBEiJ_G0036062	sense intronic lncRNA gene	Chr4:29398590-29413807 (+)

Homology

• Gene Tree
  Bach2it1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Bach2it1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000087049 (Evidence)
• NCBI Gene
  102635275

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087049	Ensembl Gene Model | MGI Sequence Detail	16473	C57BL/6J
transcript	ENSMUST00000133451	Ensembl | MGI Sequence Detail	481	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Bach2it1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36676	Chr4:32247757-32247764 (+)	-1,606 bp
Tssr36677	Chr4:32248536-32248557 (+)	-820 bp
Tssr36678	Chr4:32249273-32249310 (+)	-75 bp
Tssr36679	Chr4:32249385-32249420 (+)	36 bp
Tssr36680	Chr4:32249421-32249428 (+)	58 bp
Tssr36681	Chr4:32250574-32250589 (+)	1,215 bp
Tssr36682	Chr4:32252260-32252288 (+)	2,907 bp
Tssr36683	Chr4:32252536-32252543 (+)	3,173 bp
Tssr36684	Chr4:32258662-32258674 (+)	9,301 bp
Tssr36685	Chr4:32263880-32263893 (+)	14,520 bp