Ccdc50-ps Pseudogene Detail

Summary

• Symbol
  Ccdc50-ps
• Name
  Ccdc50 retrotransposed pseudogene
• Synonyms
  EG277707, Gm12699

• Feature Type
  pseudogene
• IDs
  MGI:3651098
  NCBI Gene: 277707
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:100424305-100425245 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651098	pseudogene	Chr4:100423767-100425351 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012787	pseudogene	Chr4:100839245-100840182 (-)
A/J	MGP_AJ_G0012772	pseudogene	Chr4:97314320-97315253 (-)
AKR/J	MGP_AKRJ_G0012743	pseudogene	Chr4:99652226-99653166 (-)
BALB/cJ	MGP_BALBcJ_G0012753	pseudogene	Chr4:97549580-97550524 (-)
C3H/HeJ	MGP_C3HHeJ_G0012610	pseudogene	Chr4:100486644-100487580 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013085	pseudogene	Chr4:104669739-104670666 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012365	pseudogene	Chr4:98269849-98270773 (-)
CBA/J	MGP_CBAJ_G0012586	pseudogene	Chr4:107937556-107938483 (-)
DBA/2J	MGP_DBA2J_G0012649	pseudogene	Chr4:97024519-97025459 (-)
FVB/NJ	MGP_FVBNJ_G0012653	pseudogene	Chr4:95863727-95864648 (-)
LP/J	MGP_LPJ_G0012724	pseudogene	Chr4:101138995-101139934 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012662	pseudogene	Chr4:113526964-113527895 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013092	pseudogene	Chr4:99926444-99927368 (-)
PWK/PhJ	MGP_PWKPhJ_G0012188	pseudogene	Chr4:95192214-95193781 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011997	pseudogene	Chr4:97382044-97385433 (-)
WSB/EiJ	MGP_WSBEiJ_G0012391	pseudogene	Chr4:100090630-100091600 (-)

Homology

• Gene Tree
  Ccdc50-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  3 involving Ccdc50-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000081553 (Evidence)
• NCBI Gene
  277707

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081553	Ensembl Gene Model | MGI Sequence Detail	941	C57BL/6J
transcript	ENSMUST00000118044	Ensembl | MGI Sequence Detail	941	Not Applicable

Other
Accession IDs

MGI:3645201

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Ccdc50-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42540	Chr4:100425201-100425234 (-)	27 bp