Gm12194 Pseudogene Detail

Summary

• Symbol
  Gm12194
• Name
  predicted gene 12194
• Synonyms
  EG380696

• Feature Type
  pseudogene
• IDs
  MGI:3651099
  NCBI Gene: 380696
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:50017734-50018745 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 30.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651099	pseudogene	Chr11:50017720-50018756 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010696	pseudogene	Chr11:49283292-49284303 (-)
A/J	MGP_AJ_G0010691	pseudogene	Chr11:47396472-47397483 (-)
AKR/J	MGP_AKRJ_G0010651	pseudogene	Chr11:48904741-48906737 (-)
BALB/cJ	MGP_BALBcJ_G0010665	pseudogene	Chr11:47677274-47678285 (-)
C3H/HeJ	MGP_C3HHeJ_G0010581	pseudogene	Chr11:48905960-48907999 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009580	pseudogene	Chr11:45018088-45019525 (-)
CAST/EiJ	MGP_CASTEiJ_G0010404	pseudogene	Chr11:48880088-48881081 (-)
CBA/J	MGP_CBAJ_G0010554	pseudogene	Chr11:53093360-53095665 (-)
DBA/2J	MGP_DBA2J_G0010591	pseudogene	Chr11:47197875-47198911 (-)
FVB/NJ	MGP_FVBNJ_G0010607	pseudogene	Chr11:46819569-46821053 (-)
LP/J	MGP_LPJ_G0010678	pseudogene	Chr11:49622407-49623524 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010580	pseudogene	Chr11:54634484-54635487 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010917	pseudogene	Chr11:49012792-49014893 (-)
PWK/PhJ	MGP_PWKPhJ_G0010300	pseudogene	Chr11:47596350-47597518 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010109	pseudogene	Chr11:48704751-48705762 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12194
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12194
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000084302 (Evidence)
• NCBI Gene
  380696

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084302	Ensembl Gene Model | MGI Sequence Detail	1012	C57BL/6J
transcript	ENSMUST00000117756	Ensembl | MGI Sequence Detail	1012	Not Applicable

Other
Accession IDs

MGI:3643574

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:97904 Makeyev AV, et al., HnRNP A3 genes and pseudogenes in the vertebrate genomes. J Exp Zoolog A Comp Exp Biol. 2005 Apr 1;303(4):259-71

TSS for Gm12194:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107709	Chr11:50018958-50018967 (-)	-218 bp