Hadhb-ps Pseudogene Detail

Summary

• Symbol
  Hadhb-ps
• Name
  hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta, pseudogene
• Synonyms
  Gm13910

• Feature Type
  pseudogene
• IDs
  MGI:3651143
  NCBI Gene: 623031
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:108779151-108780578 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 56.41 cM

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651143	pseudogene	Chr2:108779115-108781073 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011220	pseudogene	Chr15:105866821-105868248 (-)
A/J	MGP_AJ_G0011209	pseudogene	Chr15:101676384-101678623 (-)
AKR/J	MGP_AKRJ_G0011171	pseudogene	Chr15:104755060-104756487 (-)
BALB/cJ	MGP_BALBcJ_G0011177	pseudogene	Chr15:101726814-101728026 (-)
C3H/HeJ	MGP_C3HHeJ_G0011076	pseudogene	Chr15:104855117-104856544 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011472	pseudogene	Chr15:109768499-109769926 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011553	pseudogene	Chr5:24732254-24750017 (+)
CAST/EiJ	MGP_CASTEiJ_G0010902	pseudogene	Chr15:105719554-105720978 (-)
CBA/J	MGP_CBAJ_G0011055	pseudogene	Chr15:113611108-113612535 (-)
DBA/2J	MGP_DBA2J_G0011104	pseudogene	Chr15:100941263-100944675 (-)
FVB/NJ	MGP_FVBNJ_G0011106	pseudogene	Chr15:99999873-100001297 (-)
LP/J	MGP_LPJ_G0011195	pseudogene	Chr15:106008147-106009574 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011100	pseudogene	Chr15:117096214-117101992 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011450	pseudogene	Chr15:104788562-104790080 (-)
PWK/PhJ	MGP_PWKPhJ_G0010776	pseudogene	Chr15:101132998-101134353 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010600	pseudogene	Chr15:104628096-104629523 (-)
WSB/EiJ	MGP_WSBEiJ_G0010948	pseudogene	Chr15:105408488-105409730 (-)

Homology

• Gene Tree
  Hadhb-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Hadhb-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000063684 (Evidence)
• NCBI Gene
  623031

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000063684	Ensembl Gene Model | MGI Sequence Detail	1428	C57BL/6J
transcript	ENSMUST00000121752	Ensembl | MGI Sequence Detail	1428	Not Applicable

Other
Accession IDs

MGI:6362704

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:151902 Favor J, et al., Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes. Genetics. 2009 Aug;182(4):1077-88

TSS for Hadhb-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19298	Chr2:108779113-108779125 (+)	-32 bp