Gm13669 Pseudogene Detail

Summary

• Symbol
  Gm13669
• Name
  predicted gene 13669

• Feature Type
  pseudogene
• IDs
  MGI:3651174
  NCBI Gene: 623453
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:75638702-75639158 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.77 cM

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651174	pseudogene	Chr2:75638578-75639195 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011705	pseudogene	Chr2:76188509-76188937 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0011667	pseudogene	Chr2:75176965-75177392 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011598	pseudogene	Chr2:72185813-72186240 (+)
LP/J	MGP_LPJ_G0011661	pseudogene	Chr2:76039417-76039873 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011969	pseudogene	Chr2:75315147-75315603 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13669
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13669
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9

• Ensembl
  ENSMUSG00000081833 (Evidence)
• NCBI Gene
  623453

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081833	Ensembl Gene Model | MGI Sequence Detail	457	C57BL/6J
transcript	ENSMUST00000122366	Ensembl | MGI Sequence Detail	457	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13669:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18469	Chr2:75638590-75638614 (+)	-100 bp