Gm13904 Pseudogene Detail

Summary

• Symbol
  Gm13904
• Name
  predicted gene 13904

• Feature Type
  pseudogene
• IDs
  MGI:3651201
  NCBI Gene: 383739
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:106841283-106842119 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.99 cM

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651201	pseudogene	Chr2:106841232-106842294 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011811	pseudogene	Chr2:109247938-109248774 (+)
A/J	MGP_AJ_G0011802	pseudogene	Chr2:104689278-104690114 (+)
AKR/J	MGP_AKRJ_G0011770	pseudogene	Chr2:107558209-107559154 (+)
BALB/cJ	MGP_BALBcJ_G0011778	pseudogene	Chr2:104972881-104973717 (+)
C3H/HeJ	MGP_C3HHeJ_G0011666	pseudogene	Chr2:107881512-107882521 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012083	pseudogene	Chr2:112816806-112817642 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010575	pseudogene	Chr2:100459743-100460799 (+)
CAST/EiJ	MGP_CASTEiJ_G0011453	pseudogene	Chr2:108402575-108403584 (+)
CBA/J	MGP_CBAJ_G0011643	pseudogene	Chr2:116732760-116734396 (+)
DBA/2J	MGP_DBA2J_G0011694	pseudogene	Chr2:104241017-104241853 (+)
FVB/NJ	MGP_FVBNJ_G0011696	pseudogene	Chr2:103196149-103196985 (+)
LP/J	MGP_LPJ_G0011763	pseudogene	Chr2:109429808-109430752 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011701	pseudogene	Chr2:120521228-120522064 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012076	pseudogene	Chr2:107751766-107752602 (+)
PWK/PhJ	MGP_PWKPhJ_G0011303	pseudogene	Chr2:103796316-103797431 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011125	pseudogene	Chr2:106971647-106972654 (+)
WSB/EiJ	MGP_WSBEiJ_G0011478	pseudogene	Chr2:108486214-108487247 (+)

Homology

• Gene Tree
  Gm13904
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm13904
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082066 (Evidence)
• NCBI Gene
  383739

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082066	Ensembl Gene Model | MGI Sequence Detail	837	C57BL/6J
transcript	ENSMUST00000121901	Ensembl | MGI Sequence Detail	837	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:151902 Favor J, et al., Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes. Genetics. 2009 Aug;182(4):1077-88

TSS for Gm13904:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19290	Chr2:106841229-106841238 (+)	-49 bp
Tssr19291	Chr2:106841395-106841415 (+)	122 bp