Gm11405 Pseudogene Detail

Summary

• Symbol
  Gm11405
• Name
  predicted gene 11405

• Feature Type
  pseudogene
• IDs
  MGI:3651226
  NCBI Gene: 100039774
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:74146434-74147989 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM

Strain
Comparison

• SNPs within 2kb
  261 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651226	pseudogene	Chr4:74146363-74148186 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012710	pseudogene	Chr4:73499477-73504012 (+)
A/J	MGP_AJ_G0012696	pseudogene	Chr4:71014774-71016329 (+)
AKR/J	MGP_AKRJ_G0012668	pseudogene	Chr4:72743930-72745485 (+)
BALB/cJ	MGP_BALBcJ_G0012679	pseudogene	Chr4:71148692-71150112 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013008	pseudogene	Chr4:76284021-76285576 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012293	pseudogene	Chr4:71362797-71364328 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012575	pseudogene	Chr4:70779429-70780728 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012648	pseudogene	Chr4:73861015-73862540 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012587	pseudogene	Chr4:82675920-82677475 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013013	pseudogene	Chr4:72903914-72905463 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012318	pseudogene	Chr4:72967313-72968648 (+)

Homology

• Gene Tree
  Gm11405
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm11405
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000083767 (Evidence)
• NCBI Gene
  100039774

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083767	Ensembl Gene Model | MGI Sequence Detail	1556	C57BL/6J
transcript	ENSMUST00000118689	Ensembl | MGI Sequence Detail	1556	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;