Gm11824 Pseudogene Detail

Summary

• Symbol
  Gm11824
• Name
  predicted gene 11824

• Feature Type
  pseudogene
• IDs
  MGI:3651313
  NCBI Gene: 433687
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:14170066-14170911 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 6.08 cM

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651313	pseudogene	Chr4:14169977-14170977 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012518	pseudogene	Chr4:10955514-10956374 (+)
A/J	MGP_AJ_G0012513	pseudogene	Chr4:10735901-10737118 (+)
AKR/J	MGP_AKRJ_G0012476	pseudogene	Chr4:10867035-10867836 (+)
BALB/cJ	MGP_BALBcJ_G0012496	pseudogene	Chr4:10643227-10643983 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012812	pseudogene	Chr4:11443608-11444453 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012335	pseudogene	Chr4:11672439-11673647 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012393	pseudogene	Chr4:10360193-10361000 (+)
LP/J	MGP_LPJ_G0012465	pseudogene	Chr4:11055979-11065040 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012400	pseudogene	Chr4:12043466-12044311 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012811	pseudogene	Chr4:10862172-10863888 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012147	pseudogene	Chr4:10930567-10931349 (+)

Homology

• Gene Tree
  Gm11824
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000082128 (Evidence)
• NCBI Gene
  433687

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082128	Ensembl Gene Model | MGI Sequence Detail	846	C57BL/6J
transcript	ENSMUST00000120191	Ensembl | MGI Sequence Detail	846	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11824:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36532	Chr4:14169975-14169984 (+)	-86 bp