Slc2a4rg-ps Pseudogene Detail

Summary

• Symbol
  Slc2a4rg-ps
• Name
  Slc2a4 regulator, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3651388
  NCBI Gene: 329584
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:181026204-181028992 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 103.63 cM

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651388	pseudogene	Chr2:181026043-181029389 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027023	pseudogene	Chr2:187973256-187976581 (+)
A/J	MGP_AJ_G0026989	pseudogene	Chr2:180236341-180239670 (+)
AKR/J	MGP_AKRJ_G0039801	pseudogene	Chr2:185638836-185642237 (+)
BALB/cJ	MGP_BALBcJ_G0039854	pseudogene	Chr2:180709175-180712504 (+)
C3H/HeJ	MGP_C3HHeJ_G0026739	pseudogene	Chr2:185991293-185994651 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040420	pseudogene	Chr2:193402324-193405648 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0026198	pseudogene	Chr2:184256543-184259907 (+)
CBA/J	MGP_CBAJ_G0026716	pseudogene	Chr2:200411415-200414743 (+)
DBA/2J	MGP_DBA2J_G0039672	pseudogene	Chr2:179334345-179337662 (+)
FVB/NJ	MGP_FVBNJ_G0039630	pseudogene	Chr2:177951799-177956489 (+)
LP/J	MGP_LPJ_G0026955	pseudogene	Chr2:187997297-188000730 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0026839	pseudogene	Chr2:202971301-202974629 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027503	pseudogene	Chr2:185606570-185609897 (+)
PWK/PhJ	MGP_PWKPhJ_G0025934	pseudogene	Chr2:176858199-176861592 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0025734	pseudogene	Chr2:182110087-182113453 (+)
WSB/EiJ	MGP_WSBEiJ_G0026270	pseudogene	Chr2:186593672-186597018 (+)

Homology

• MGI Vertebrate Homology
  Slc2a4rg-ps stringent orthology
  1 mouse;1 zebrafish
  
• Gene Tree
  Slc2a4rg-ps
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085028 (Evidence)
• NCBI Gene
  329584

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085028	Ensembl Gene Model | MGI Sequence Detail	2789	C57BL/6J
transcript	ENSMUST00000176590	Ensembl | MGI Sequence Detail	1143	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Slc2a4rg-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22311	Chr2:181027553-181027555 (+)	1,350 bp
Tssr809	Chr2:181027696-181027700 (+)	1,494 bp