Gm11222 Pseudogene Detail

Summary

• Symbol
  Gm11222
• Name
  predicted gene 11222

• Feature Type
  pseudogene
• IDs
  MGI:3651632
  NCBI Gene: 433716
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:69772184-69772921 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 35.66 cM

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651632	pseudogene	Chr4:69772170-69773118 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012698	pseudogene	Chr4:69031657-69032394 (+)
A/J	MGP_AJ_G0012683	pseudogene	Chr4:66629287-66630024 (+)
AKR/J	MGP_AKRJ_G0012655	pseudogene	Chr4:68361295-68362032 (+)
BALB/cJ	MGP_BALBcJ_G0012666	pseudogene	Chr4:66808520-66809257 (+)
C3H/HeJ	MGP_C3HHeJ_G0012526	pseudogene	Chr4:68913533-68914270 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012995	pseudogene	Chr4:71437421-71438158 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010366	pseudogene	Chr11:28631554-28632299 (-)
CBA/J	MGP_CBAJ_G0012503	pseudogene	Chr4:73819392-73820129 (+)
DBA/2J	MGP_DBA2J_G0012563	pseudogene	Chr4:66423480-66424217 (+)
FVB/NJ	MGP_FVBNJ_G0012566	pseudogene	Chr4:65589319-65590056 (+)
LP/J	MGP_LPJ_G0012636	pseudogene	Chr4:69338267-69339004 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012574	pseudogene	Chr4:77425319-77426056 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013000	pseudogene	Chr4:68462739-68463476 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0011922	pseudogene	Chr4:65974428-65975167 (+)
WSB/EiJ	MGP_WSBEiJ_G0012305	pseudogene	Chr4:68551440-68552177 (+)

Homology

• Gene Tree
  Gm11222
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000085627 (Evidence)
• NCBI Gene
  433716

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085627	Ensembl Gene Model | MGI Sequence Detail	738	C57BL/6J
transcript	ENSMUST00000119005	Ensembl | MGI Sequence Detail	738	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11222:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37620	Chr4:69772166-69772178 (+)	-12 bp