Gm11221 Pseudogene Detail

Summary

• Symbol
  Gm11221
• Name
  predicted gene 11221

• Feature Type
  pseudogene
• IDs
  MGI:3651633
  NCBI Gene: 622491
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:69610215-69610811 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 35.49 cM

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651633	pseudogene	Chr4:69610192-69610888 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012697	pseudogene	Chr4:68860640-68861240 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012994	pseudogene	Chr4:71276796-71277392 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012386	pseudogene	Chr9:37033391-37033977 (+)
CAST/EiJ	MGP_CASTEiJ_G0012282	pseudogene	Chr4:66737204-66737784 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012565	pseudogene	Chr4:65441214-65442358 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012573	pseudogene	Chr4:77256334-77256930 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012999	pseudogene	Chr4:68320757-68321337 (+)
PWK/PhJ	MGP_PWKPhJ_G0012108	pseudogene	Chr4:64743177-64743773 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013196	pseudogene	Chr9:38241263-38241845 (+)
WSB/EiJ	MGP_WSBEiJ_G0012304	pseudogene	Chr4:68403527-68404107 (+)

Homology

• Gene Tree
  Gm11221
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000082998 (Evidence)
• NCBI Gene
  622491

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082998	Ensembl Gene Model | MGI Sequence Detail	597	C57BL/6J
transcript	ENSMUST00000117230	Ensembl | MGI Sequence Detail	597	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11221:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37619	Chr4:69610189-69610199 (+)	-21 bp