Gm12860 Gene Detail

Summary

• Symbol
  Gm12860
• Name
  predicted gene 12860

• Feature Type
  lncRNA gene
• IDs
  MGI:3651651
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:120473029-120495451 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 56.52 cM

Strain
Comparison

• SNPs within 2kb
  774 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651651	lncRNA gene	Chr4:120473029-120495451 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006499	lincRNA gene	Chr4:121884226-121891100 (+)
A/J	MGP_AJ_G0006491	lincRNA gene	Chr4:117087964-117094904 (+)
AKR/J	MGP_AKRJ_G0006465	lincRNA gene	Chr4:119652211-119659053 (+)
BALB/cJ	MGP_BALBcJ_G0006465	lincRNA gene	Chr4:117696541-117703501 (+)
C3H/HeJ	MGP_C3HHeJ_G0006415	lincRNA gene	Chr4:121187131-121194195 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006631	lincRNA gene	Chr4:126487525-126494410 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005910	lincRNA gene	Chr4:111150605-111157728 (+)
CAST/EiJ	MGP_CASTEiJ_G0006347	lincRNA gene	Chr4:118553845-118560626 (+)
CBA/J	MGP_CBAJ_G0006398	lincRNA gene	Chr4:129910440-129917312 (+)
DBA/2J	MGP_DBA2J_G0006420	lincRNA gene	Chr4:117664392-117671113 (+)
FVB/NJ	MGP_FVBNJ_G0006442	lincRNA gene	Chr4:116189374-116196216 (+)
LP/J	MGP_LPJ_G0006500	lincRNA gene	Chr4:122013283-122020215 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006429	lincRNA gene	Chr4:134748457-134755327 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006635	lincRNA gene	Chr4:120726674-120733516 (+)
PWK/PhJ	MGP_PWKPhJ_G0006284	lincRNA gene	Chr4:114609297-114616147 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006194	lincRNA gene	Chr4:117166099-117172898 (+)
WSB/EiJ	MGP_WSBEiJ_G0006393	lincRNA gene	Chr4:120736158-120742954 (+)

Homology

• Gene Tree
  Gm12860
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12860
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086187 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086187	Ensembl Gene Model | MGI Sequence Detail	22423	C57BL/6J
transcript	ENSMUST00000243511	Ensembl | MGI Sequence Detail	961	Not Applicable

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12860:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38799	Chr4:120473013-120473029 (+)	-8 bp