Gm13270 Gene Detail

Summary

• Symbol
  Gm13270
• Name
  predicted gene 13270

• Feature Type
  lncRNA gene
• IDs
  MGI:3651704
  NCBI Gene: 105244084
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:13276388-13292764 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 9.85 cM

Strain
Comparison

• SNPs within 2kb
  569 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651704	lncRNA gene	Chr2:13276388-13330641 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015393	unclassified non-coding RNA gene	Chr2:10758340-10819979 (+)
A/J	MGP_AJ_G0015368	unclassified non-coding RNA gene	Chr2:10357811-10413186 (+)
AKR/J	MGP_AKRJ_G0015332	unclassified non-coding RNA gene	Chr2:10657382-10712176 (+)
BALB/cJ	MGP_BALBcJ_G0015332	unclassified non-coding RNA gene	Chr2:10348415-10404326 (+)
C3H/HeJ	MGP_C3HHeJ_G0015156	unclassified non-coding RNA gene	Chr2:10605638-10662517 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015786	unclassified non-coding RNA gene	Chr2:11042605-11101746 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013527	unclassified non-coding RNA gene	Chr2:9960598-10027701 (+)
CAST/EiJ	MGP_CASTEiJ_G0014707	unclassified non-coding RNA gene	Chr2:10570736-10623834 (+)
CBA/J	MGP_CBAJ_G0015135	unclassified non-coding RNA gene	Chr2:11522828-11585277 (+)
DBA/2J	MGP_DBA2J_G0015230	unclassified non-coding RNA gene	Chr2:10252741-10306663 (+)
FVB/NJ	MGP_FVBNJ_G0015237	unclassified non-coding RNA gene	Chr2:10148394-10202830 (+)
LP/J	MGP_LPJ_G0015310	unclassified non-coding RNA gene	Chr2:10667054-10721825 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015263	unclassified non-coding RNA gene	Chr2:11399434-11459432 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015825	unclassified non-coding RNA gene	Chr2:10573623-10629123 (+)
PWK/PhJ	MGP_PWKPhJ_G0014497	unclassified non-coding RNA gene	Chr2:10139988-10193711 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014284	unclassified non-coding RNA gene	Chr2:10606688-10669008 (+)
WSB/EiJ	MGP_WSBEiJ_G0014814	unclassified non-coding RNA gene	Chr2:10665873-10721750 (+)

Homology

• Gene Tree
  Gm13270
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086358 (Evidence)
• NCBI Gene
  105244084

Representative Sequences			Length	Strain/Species
genomic	105244084	NCBI Gene Model | MGI Sequence Detail	16377	C57BL/6J
transcript	XR_865975	RefSeq | MGI Sequence Detail	1204	C57BL/6J

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13270:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16184	Chr2:13276390-13276441 (+)	28 bp