Gm13612 Pseudogene Detail

Summary

• Symbol
  Gm13612
• Name
  predicted gene 13612

• Feature Type
  pseudogene
• IDs
  MGI:3651734
  NCBI Gene: 667443
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:68661361-68661750 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 39.53 cM

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651734	pseudogene	Chr2:68661257-68661765 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011684	pseudogene	Chr2:68747025-68747537 (+)
A/J	MGP_AJ_G0011679	pseudogene	Chr2:66103387-66103776 (+)
AKR/J	MGP_AKRJ_G0011645	pseudogene	Chr2:67883542-67883931 (+)
BALB/cJ	MGP_BALBcJ_G0011660	pseudogene	Chr2:66275391-66275780 (+)
C3H/HeJ	MGP_C3HHeJ_G0011546	pseudogene	Chr2:68111948-68112337 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011955	pseudogene	Chr2:70837091-70837480 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010469	pseudogene	Chr2:63356617-63356988 (+)
CAST/EiJ	MGP_CASTEiJ_G0011336	pseudogene	Chr2:68208548-68208935 (+)
CBA/J	MGP_CBAJ_G0011519	pseudogene	Chr2:73421453-73421842 (+)
DBA/2J	MGP_DBA2J_G0011574	pseudogene	Chr2:65750968-65751355 (+)
FVB/NJ	MGP_FVBNJ_G0011576	pseudogene	Chr2:65127226-65127615 (+)
LP/J	MGP_LPJ_G0011640	pseudogene	Chr2:68616852-68617241 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011575	pseudogene	Chr2:75502935-75503324 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011947	pseudogene	Chr2:67970082-67970471 (+)
PWK/PhJ	MGP_PWKPhJ_G0011193	pseudogene	Chr2:65580831-65581220 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011014	pseudogene	Chr2:68190857-68191220 (+)
WSB/EiJ	MGP_WSBEiJ_G0011362	pseudogene	Chr2:68394713-68395102 (+)

Homology

• Gene Tree
  Gm13612
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13612
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082836 (Evidence)
• NCBI Gene
  667443

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082836	Ensembl Gene Model | MGI Sequence Detail	390	C57BL/6J
transcript	ENSMUST00000119276	Ensembl | MGI Sequence Detail	390	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13612:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18031	Chr2:68661101-68661122 (+)	-249 bp