Gm12602 Gene Detail

Summary

• Symbol
  Gm12602
• Name
  predicted gene 12602

• Feature Type
  lncRNA gene
• IDs
  MGI:3651757
  NCBI Gene: 102637941
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:89018104-89046463 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 42.14 cM

Strain
Comparison

• SNPs within 2kb
  710 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651757	lncRNA gene	Chr4:89018103-89046466 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015554	unclassified non-coding RNA gene	Chr4:89038473-89065978 (-)
A/J	MGP_AJ_G0015531	unclassified non-coding RNA gene	Chr4:85911142-85939117 (-)
AKR/J	MGP_AKRJ_G0015495	unclassified non-coding RNA gene	Chr4:88036030-88065230 (-)
BALB/cJ	MGP_BALBcJ_G0015493	unclassified non-coding RNA gene	Chr4:86144854-86171894 (-)
C3H/HeJ	MGP_C3HHeJ_G0015315	unclassified non-coding RNA gene	Chr4:88783720-88812701 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015946	unclassified non-coding RNA gene	Chr4:92417454-92446700 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013682	unclassified non-coding RNA gene	Chr4:81849111-81882936 (-)
CAST/EiJ	MGP_CASTEiJ_G0014870	unclassified non-coding RNA gene	Chr4:86622567-86649803 (-)
CBA/J	MGP_CBAJ_G0015296	unclassified non-coding RNA gene	Chr4:95279038-95311830 (-)
DBA/2J	MGP_DBA2J_G0015390	unclassified non-coding RNA gene	Chr4:85668306-85695039 (-)
FVB/NJ	MGP_FVBNJ_G0015397	unclassified non-coding RNA gene	Chr4:84604178-84630128 (-)
LP/J	MGP_LPJ_G0015470	unclassified non-coding RNA gene	Chr4:89326217-89353082 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015420	unclassified non-coding RNA gene	Chr4:100272464-100300218 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015988	unclassified non-coding RNA gene	Chr4:88189954-88217270 (-)
PWK/PhJ	MGP_PWKPhJ_G0014655	unclassified non-coding RNA gene	Chr4:83958797-83986651 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014444	unclassified non-coding RNA gene	Chr4:85711314-85739444 (-)
WSB/EiJ	MGP_WSBEiJ_G0014975	unclassified non-coding RNA gene	Chr4:88400749-88428950 (-)

Homology

• Gene Tree
  Gm12602
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12602
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000085569 (Evidence)
• NCBI Gene
  102637941

Representative Sequences			Length	Strain/Species
genomic	102637941	NCBI Gene Model | MGI Sequence Detail	28360	C57BL/6J
transcript	NR_151607	RefSeq | MGI Sequence Detail	1504	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12602:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42403	Chr4:89046454-89046474 (-)	-1 bp
Tssr42402	Chr4:89044779-89044793 (-)	1,677 bp