Gm13015 Pseudogene Detail

Summary

• Symbol
  Gm13015
• Name
  predicted gene 13015

• Feature Type
  pseudogene
• IDs
  MGI:3651767
  NCBI Gene: 625405
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:117006120-117006323 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.41 cM

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651767	pseudogene	Chr4:117006099-117006502 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012840	pseudogene	Chr4:118111608-118111811 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013142	pseudogene	Chr4:122668441-122668644 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012412	pseudogene	Chr4:114822683-114822886 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012701	pseudogene	Chr4:112694283-112694486 (+)
LP/J	MGP_LPJ_G0012773	pseudogene	Chr4:118290660-118290863 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012712	pseudogene	Chr4:130972754-130972957 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013153	pseudogene	Chr4:117186036-117186239 (+)
PWK/PhJ	MGP_PWKPhJ_G0012232	pseudogene	Chr4:110992517-110992720 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012041	pseudogene	Chr4:113488809-113489010 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13015
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm13015
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000070834 (Evidence)
• NCBI Gene
  625405

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070834	Ensembl Gene Model | MGI Sequence Detail	204	C57BL/6J
transcript	ENSMUST00000118674	Ensembl | MGI Sequence Detail	204	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13015:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38606	Chr4:117006109-117006111 (+)	-10 bp