Gm11878 Pseudogene Detail

Summary

• Symbol
  Gm11878
• Name
  predicted gene 11878

• Feature Type
  pseudogene
• IDs
  MGI:3651784
  NCBI Gene: 664911
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:22519628-22520027 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 9.73 cM

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651784	pseudogene	Chr4:22519613-22520097 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012552	pseudogene	Chr4:19592881-19593280 (+)
A/J	MGP_AJ_G0011986	pseudogene	Chr3:888699-889097 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0011841	pseudogene	Chr3:897294-897692 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012845	pseudogene	Chr4:20355793-20356192 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010253	pseudogene	Chr18:31905629-31906030 (+)
CAST/EiJ	MGP_CASTEiJ_G0011622	pseudogene	Chr3:952651-953052 (+)
CBA/J	MGP_CBAJ_G0012370	pseudogene	Chr4:20966895-20967294 (+)
DBA/2J	MGP_DBA2J_G0011868	pseudogene	Chr3:530205-530603 (+)
FVB/NJ	MGP_FVBNJ_G0011876	pseudogene	Chr3:506966-507364 (+)
LP/J	MGP_LPJ_G0011937	pseudogene	Chr3:876277-876675 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011876	pseudogene	Chr3:895019-895417 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012846	pseudogene	Chr4:19392662-19393060 (+)
PWK/PhJ	MGP_PWKPhJ_G0011472	pseudogene	Chr3:857486-857884 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011288	pseudogene	Chr3:755841-756242 (+)
WSB/EiJ	MGP_WSBEiJ_G0011644	pseudogene	Chr3:528730-529131 (+)

Homology

• Gene Tree
  Gm11878
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000081810 (Evidence)
• NCBI Gene
  664911

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081810	Ensembl Gene Model | MGI Sequence Detail	400	C57BL/6J
transcript	ENSMUST00000117908	Ensembl | MGI Sequence Detail	400	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11878:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36633	Chr4:22519588-22519601 (+)	-33 bp