Gm11613 Gene Detail

Summary

• Symbol
  Gm11613
• Name
  predicted gene 11613

• Feature Type
  lncRNA gene
• IDs
  MGI:3651819
  NCBI Gene: 108167924
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:97535010-97551193 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 61.04 cM

Strain
Comparison

• SNPs within 2kb
  507 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651819	lncRNA gene	Chr11:97535010-97551225 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015203	unclassified non-coding RNA gene	Chr11:100094016-100112757 (-)
A/J	MGP_AJ_G0015177	unclassified non-coding RNA gene	Chr11:95965944-95982492 (-)
AKR/J	MGP_AKRJ_G0015140	unclassified non-coding RNA gene	Chr11:98944695-98962489 (-)
BALB/cJ	MGP_BALBcJ_G0015139	unclassified non-coding RNA gene	Chr11:96449463-96466599 (-)
C3H/HeJ	MGP_C3HHeJ_G0014963	unclassified non-coding RNA gene	Chr11:99061418-99079388 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015596	unclassified non-coding RNA gene	Chr11:103182672-103200651 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013339	unclassified non-coding RNA gene	Chr11:93419893-93437095 (-)
CAST/EiJ	MGP_CASTEiJ_G0014516	unclassified non-coding RNA gene	Chr11:99927608-99946384 (-)
CBA/J	MGP_CBAJ_G0014942	unclassified non-coding RNA gene	Chr11:107442737-107465216 (-)
DBA/2J	MGP_DBA2J_G0015035	unclassified non-coding RNA gene	Chr11:95516179-95532028 (-)
FVB/NJ	MGP_FVBNJ_G0015047	unclassified non-coding RNA gene	Chr11:95011044-95027261 (-)
LP/J	MGP_LPJ_G0015116	unclassified non-coding RNA gene	Chr11:100596559-100614977 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015073	unclassified non-coding RNA gene	Chr11:107284801-107304575 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015635	unclassified non-coding RNA gene	Chr11:99241869-99263593 (-)
PWK/PhJ	MGP_PWKPhJ_G0014308	unclassified non-coding RNA gene	Chr11:96501709-96517888 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014095	unclassified non-coding RNA gene	Chr11:98963505-98981706 (-)
WSB/EiJ	MGP_WSBEiJ_G0014619	unclassified non-coding RNA gene	Chr11:99151669-99167575 (-)

Homology

• Gene Tree
  Gm11613
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  77
• Gene trapped
  76
• Targeted
  1
• Genomic Mutations
  1 involving Gm11613
• Find Mice (IMSR)
  64 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3

• Ensembl
  ENSMUSG00000085586 (Evidence)
• NCBI Gene
  108167924

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085586	Ensembl Gene Model | MGI Sequence Detail	16184	C57BL/6J
transcript	ENSMUST00000134427	Ensembl | MGI Sequence Detail	1971	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 19

  Phenotypes 11
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11613:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110464	Chr11:97551179-97551227 (-)	-10 bp
Tssr110462	Chr11:97548816-97548827 (-)	2,371 bp
Tssr110461	Chr11:97548138-97548149 (-)	3,049 bp