Gm11556 Pseudogene Detail

Summary

• Symbol
  Gm11556
• Name
  predicted gene 11556

• Feature Type
  pseudogene
• IDs
  MGI:3651824
  NCBI Gene: 101055913
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:99730799-99731086 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 63.18 cM

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651824	pseudogene	Chr11:99730371-99731201 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010839	pseudogene	Chr11:102551822-102552109 (-)
A/J	MGP_AJ_G0010837	pseudogene	Chr11:98225900-98226187 (-)
AKR/J	MGP_AKRJ_G0010796	pseudogene	Chr11:101267121-101267408 (-)
BALB/cJ	MGP_BALBcJ_G0010812	pseudogene	Chr11:98757616-98757903 (-)
C3H/HeJ	MGP_C3HHeJ_G0010716	pseudogene	Chr11:101457280-101457567 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011084	pseudogene	Chr11:105669679-105669966 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010686	pseudogene	Chr11:110116764-110117051 (-)
DBA/2J	MGP_DBA2J_G0010731	pseudogene	Chr11:97782040-97782327 (-)
FVB/NJ	MGP_FVBNJ_G0010751	pseudogene	Chr11:97307125-97307412 (-)
LP/J	MGP_LPJ_G0010821	pseudogene	Chr11:103053093-103053380 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010726	pseudogene	Chr11:109759236-109759523 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011063	pseudogene	Chr11:101639880-101640167 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010591	pseudogene	Chr11:101609437-101609724 (-)

Homology

• Gene Tree
  Gm11556
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000082531 (Evidence)
• NCBI Gene
  101055913

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082531	Ensembl Gene Model | MGI Sequence Detail	288	C57BL/6J
transcript	ENSMUST00000120751	Ensembl | MGI Sequence Detail	288	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11556:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110714	Chr11:99731171-99731194 (-)	-97 bp