Gm12043 Gene Detail

Summary

• Symbol
  Gm12043
• Name
  predicted gene 12043

• Feature Type
  lncRNA gene
• IDs
  MGI:3651843
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:21320400-21324161 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 13.89 cM

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651843	lncRNA gene	Chr11:21320400-21324161 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015156	unclassified non-coding RNA gene	Chr11:18971384-18975135 (+)
A/J	MGP_AJ_G0015130	unclassified non-coding RNA gene	Chr11:18298517-18302280 (+)
AKR/J	MGP_AKRJ_G0015093	unclassified non-coding RNA gene	Chr11:18948687-18952416 (+)
BALB/cJ	MGP_BALBcJ_G0015093	unclassified non-coding RNA gene	Chr11:18413945-18417701 (+)
C3H/HeJ	MGP_C3HHeJ_G0014916	unclassified non-coding RNA gene	Chr11:18831181-18835612 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015549	unclassified non-coding RNA gene	Chr11:19811516-19815295 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013295	unclassified non-coding RNA gene	Chr11:17252691-17256447 (+)
CAST/EiJ	MGP_CASTEiJ_G0014470	unclassified non-coding RNA gene	Chr11:18832241-18836755 (+)
CBA/J	MGP_CBAJ_G0014895	unclassified non-coding RNA gene	Chr11:20666805-20670545 (+)
DBA/2J	MGP_DBA2J_G0014988	unclassified non-coding RNA gene	Chr11:18243946-18247653 (+)
FVB/NJ	MGP_FVBNJ_G0015000	unclassified non-coding RNA gene	Chr11:18006312-18010041 (+)
LP/J	MGP_LPJ_G0015070	unclassified non-coding RNA gene	Chr11:19121785-19125654 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015026	unclassified non-coding RNA gene	Chr11:21072968-21082198 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015588	unclassified non-coding RNA gene	Chr11:19026917-19030664 (+)
PWK/PhJ	MGP_PWKPhJ_G0014262	unclassified non-coding RNA gene	Chr11:18260714-18264592 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014050	unclassified non-coding RNA gene	Chr11:18749449-18753210 (+)
WSB/EiJ	MGP_WSBEiJ_G0014573	unclassified non-coding RNA gene	Chr11:18679300-18683701 (+)

Homology

• Gene Tree
  Gm12043
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12043
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087253 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087253	Ensembl Gene Model | MGI Sequence Detail	3762	C57BL/6J
transcript	ENSMUST00000131570	Ensembl | MGI Sequence Detail	2788	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12043:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100572	Chr11:21320733-21320737 (+)	335 bp
Tssr3442	Chr11:21320992-21321026 (+)	609 bp