Gm13937 Pseudogene Detail

Summary

• Symbol
  Gm13937
• Name
  predicted gene 13937

• Feature Type
  pseudogene
• IDs
  MGI:3651879
  NCBI Gene: 668797
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:110039523-110040510 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 56.70 cM

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651879	pseudogene	Chr2:110039026-110040612 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011818	pseudogene	Chr2:112559406-112560390 (-)
A/J	MGP_AJ_G0011809	pseudogene	Chr2:107866853-107867837 (-)
AKR/J	MGP_AKRJ_G0011777	pseudogene	Chr2:110897075-110898059 (-)
BALB/cJ	MGP_BALBcJ_G0011785	pseudogene	Chr2:108138944-108139928 (-)
C3H/HeJ	MGP_C3HHeJ_G0011672	pseudogene	Chr2:111163471-111164455 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012090	pseudogene	Chr2:116223578-116224565 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011460	pseudogene	Chr2:111678515-111679499 (-)
CBA/J	MGP_CBAJ_G0011649	pseudogene	Chr2:120226975-120227959 (-)
DBA/2J	MGP_DBA2J_G0011701	pseudogene	Chr2:107363501-107364485 (-)
FVB/NJ	MGP_FVBNJ_G0011703	pseudogene	Chr2:106264604-106265588 (-)
LP/J	MGP_LPJ_G0011770	pseudogene	Chr2:112748890-112749874 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011708	pseudogene	Chr2:124391373-124392357 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012083	pseudogene	Chr2:111031135-111032119 (-)
PWK/PhJ	MGP_PWKPhJ_G0011310	pseudogene	Chr2:106983864-106984848 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011131	pseudogene	Chr2:110267509-110268492 (-)
WSB/EiJ	MGP_WSBEiJ_G0011484	pseudogene	Chr2:111806942-111807926 (-)

Homology

• Gene Tree
  Gm13937
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm13937
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082512 (Evidence)
• NCBI Gene
  668797

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082512	Ensembl Gene Model | MGI Sequence Detail	988	C57BL/6J
transcript	ENSMUST00000121000	Ensembl | MGI Sequence Detail	988	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:151902 Favor J, et al., Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes. Genetics. 2009 Aug;182(4):1077-88

TSS for Gm13937:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25593	Chr2:110040611-110040612 (-)	-102 bp