Gm13935 Pseudogene Detail

Summary

• Symbol
  Gm13935
• Name
  predicted gene 13935

• Feature Type
  pseudogene
• IDs
  MGI:3651886
  NCBI Gene: 668799
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:110248515-110249964 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 56.71 cM

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651886	pseudogene	Chr2:110248467-110249985 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011819	pseudogene	Chr2:112767474-112771171 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0011778	pseudogene	Chr2:111105543-111106927 (-)
BALB/cJ	MGP_BALBcJ_G0011786	pseudogene	Chr2:108355021-108356290 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012091	pseudogene	Chr2:116447486-116452760 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011461	pseudogene	Chr2:111886087-111888320 (-)
CBA/J	MGP_CBAJ_G0011650	pseudogene	Chr2:120457312-120458165 (-)
DBA/2J	MGP_DBA2J_G0011702	pseudogene	Chr2:107576567-107577574 (-)
FVB/NJ	MGP_FVBNJ_G0011704	pseudogene	Chr2:106475475-106477505 (-)
LP/J	MGP_LPJ_G0011771	pseudogene	Chr2:112973562-112975107 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011709	pseudogene	Chr2:124617263-124619697 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012084	pseudogene	Chr2:111244931-111245930 (-)
PWK/PhJ	MGP_PWKPhJ_G0011311	pseudogene	Chr2:107188943-107190213 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13935
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm13935
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000083320 (Evidence)
• NCBI Gene
  668799

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083320	Ensembl Gene Model | MGI Sequence Detail	1450	C57BL/6J
transcript	ENSMUST00000121859	Ensembl | MGI Sequence Detail	798	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:151902 Favor J, et al., Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes. Genetics. 2009 Aug;182(4):1077-88

TSS for Gm13935:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr592	Chr2:110249978-110249988 (-)	-19 bp