Gm13986 MGI Mouse Gene Detail - MGI:3651937

Symbol

Gm13986
Name

predicted gene 13986

Feature Type

lncRNA gene
IDs

MGI:3651937
NCBI Gene: 329496
Alliance

gene page
Transcription Start Sites

14 TSS

Sequence Map

Chr2:117687772-117941683 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 59.29 cM

SNPs within 2kb

6849 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651937	lncRNA gene	Chr2:117687769-117941683 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015458	unclassified non-coding RNA gene	Chr2:120519214-120785720 (-)
A/J	MGP_AJ_G0015434	unclassified non-coding RNA gene	Chr2:115623761-115872858 (-)
AKR/J	MGP_AKRJ_G0015398	unclassified non-coding RNA gene	Chr2:118861096-119129783 (-)
BALB/cJ	MGP_BALBcJ_G0015397	unclassified non-coding RNA gene	Chr2:115882531-116133081 (-)
C3H/HeJ	MGP_C3HHeJ_G0015220	unclassified non-coding RNA gene	Chr2:119323772-119584180 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015851	unclassified non-coding RNA gene	Chr2:124495363-124764543 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013590	unclassified non-coding RNA gene	Chr2:110676361-110927274 (-)
CAST/EiJ	MGP_CASTEiJ_G0014772	unclassified non-coding RNA gene	Chr2:119625014-119887840 (-)
CBA/J	MGP_CBAJ_G0015201	unclassified non-coding RNA gene	Chr2:128891449-129172843 (-)
DBA/2J	MGP_DBA2J_G0015295	unclassified non-coding RNA gene	Chr2:115052183-115301088 (-)
FVB/NJ	MGP_FVBNJ_G0015302	unclassified non-coding RNA gene	Chr2:113877573-114125288 (-)
LP/J	MGP_LPJ_G0015373	unclassified non-coding RNA gene	Chr2:120843847-121105145 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015326	unclassified non-coding RNA gene	Chr2:133287381-133568623 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015891	unclassified non-coding RNA gene	Chr2:118977364-119245029 (-)
PWK/PhJ	MGP_PWKPhJ_G0014560	unclassified non-coding RNA gene	Chr2:114594030-114847272 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014348	unclassified non-coding RNA gene	Chr2:118128455-118403212 (-)
WSB/EiJ	MGP_WSBEiJ_G0014879	unclassified non-coding RNA gene	Chr2:119784608-120060454 (-)

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Gene Tree

Gm13986

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

3
Chemically induced (other)

1
Gene trapped

1
Radiation induced

1
Genomic Mutations

2 involving Gm13986
Find Mice (IMSR)

0 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

2

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

29
RefSeq

1

Ensembl

ENSMUSG00000087203 (Evidence)
NCBI Gene

329496

Representative Sequences				Length	Strain/Species	Flank
	genomic	329496	NCBI Gene Model \| MGI Sequence Detail	253912	C57BL/6J	± kb
	transcript	NR_126479	RefSeq \| MGI Sequence Detail	3469	C57BL/6

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All nucleic 4

Genomic 2

cDNA 2

Summaries

All 13

Phenotypes 4
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm13986:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25765	Chr2:117842855-117842866 (-)	98,822 bp
Tssr611	Chr2:117842393-117842402 (-)	99,285 bp
Tssr610	Chr2:117842374-117842388 (-)	99,302 bp
Tssr25764	Chr2:117842348-117842356 (-)	99,331 bp
Tssr25763	Chr2:117842257-117842289 (-)	99,410 bp
Tssr25762	Chr2:117838531-117838550 (-)	103,142 bp
Tssr608	Chr2:117838518-117838525 (-)	103,161 bp
Tssr25761	Chr2:117826771-117826796 (-)	114,899 bp
Tssr25760	Chr2:117807642-117807655 (-)	134,034 bp
Tssr25759	Chr2:117799282-117799293 (-)	142,395 bp
Tssr25758	Chr2:117796370-117796413 (-)	145,291 bp
Tssr25757	Chr2:117796263-117796282 (-)	145,410 bp
Tssr25756	Chr2:117761717-117761731 (-)	179,959 bp
Tssr25755	Chr2:117755920-117755939 (-)	185,753 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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