About   Help   FAQ
Ttc39aos1 Gene Detail
Summary
  • Symbol
    Ttc39aos1
  • Name
    Ttc39a opposite strand RNA 1
  • Synonyms
    Gm12750, LincRNA-EPS
Location &
Maps
more
  • Sequence Map
    Chr4:109259476-109263430 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 51.29 cM
Strain
Comparison
more
  • SNPs within 2kb
    250 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651956
 antisense lncRNA gene Chr4:109259476-109263454 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003933
 antisense lncRNA gene Chr4:110180232-110182597 (-)
A/J MGP_AJ_G0003914
 antisense lncRNA gene Chr4:106210794-106213158 (-)
AKR/J MGP_AKRJ_G0003891
 antisense lncRNA gene Chr4:108855552-108857910 (-)
BALB/cJ MGP_BALBcJ_G0003900
 antisense lncRNA gene Chr4:106425401-106427762 (-)
C3H/HeJ MGP_C3HHeJ_G0003847
 antisense lncRNA gene Chr4:109601660-109604021 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004048
 antisense lncRNA gene Chr4:114139667-114142028 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003538
 antisense lncRNA gene Chr4:101506236-101508612 (-)
CAST/EiJ MGP_CASTEiJ_G0003811
 antisense lncRNA gene Chr4:107454348-107456760 (-)
CBA/J MGP_CBAJ_G0003840
 antisense lncRNA gene Chr4:117886633-117888994 (-)
DBA/2J MGP_DBA2J_G0003857
 antisense lncRNA gene Chr4:105832334-105834727 (-)
FVB/NJ MGP_FVBNJ_G0003875
 antisense lncRNA gene Chr4:104708652-104711016 (-)
LP/J MGP_LPJ_G0003936
 antisense lncRNA gene Chr4:110428355-110430751 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003863
 antisense lncRNA gene Chr4:123068086-123070447 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004043
 antisense lncRNA gene Chr4:109097955-109100316 (-)
PWK/PhJ MGP_PWKPhJ_G0003765
 antisense lncRNA gene Chr4:104121772-104124130 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003712
 antisense lncRNA gene Chr4:106479921-106483536 (-)
WSB/EiJ MGP_WSBEiJ_G0003846
 antisense lncRNA gene Chr4:109277877-109281188 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 2 alleles in 2 genetic backgrounds
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice exhibit increased susceptibility to LPS-induced endotoxin shock and to induced acute pancreatitis.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      29
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000085873 Ensembl Gene Model | MGI Sequence Detail 3955 C57BL/6J ±  kb
    transcript ENSMUST00000247239 Ensembl | MGI Sequence Detail 2480 Not Applicable  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 1
      cDNA 1
    References
    more
    • Summaries
      All 16
      Gene Ontology 1
      Phenotypes 9
    • Earliest
      J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
    • Latest
      J:327556 Zhu J, et al., LincRNA-EPS impairs host antiviral immunity by antagonizing viral RNA-PKR interaction. EMBO Rep. 2022 May 4;23(5):e53937
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory